Gene detail

Detail information of GWHGAAZE001070

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008806967.1	2.703E-134	PREDICTED: 60S ribosomal protein L10a-2 [Phoenix dactylifera]
Swissprot	tr\|Q8VZB9\|R10A1_ARATH	4E-127	60S ribosomal protein L10a-1
trEMBL	tr\|F6HKK9\|F6HKK9_VITVI	9E-131	Ribosomal protein {ECO:0000256\|RuleBase:RU000659}
TAIR10	AT1G08360.1	3E-100	Ribosomal protein L1p/L10e family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	23693677	23695976	-
GWHAAZE00000001	mRNA	23693677	23695976	-
GWHAAZE00000001	exon	23693677	23693730	-
GWHAAZE00000001	exon	23694354	23694559	-
GWHAAZE00000001	exon	23694752	23694917	-
GWHAAZE00000001	exon	23695492	23695714	-
GWHAAZE00000001	exon	23695954	23695976	-
GWHAAZE00000001	CDS	23695954	23695976	-
GWHAAZE00000001	CDS	23695492	23695714	-
GWHAAZE00000001	CDS	23694752	23694917	-
GWHAAZE00000001	CDS	23694354	23694559	-
GWHAAZE00000001	CDS	23693677	23693730	-

Transcript Sequence
>GWHTAAZE001072 ATGATTAGTGGTCAGATTCAGAGTAAGCTTCAGAGTGATGCCTTGAGAGAAGCTATTACTCAAATTGCCAAGGACGCATCGGGGGAGAAAAAGCGTAATTTTGTTGAGACCATTGAGCTTCAGATTGGTCTGAAGAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAATTGCCTCATATCCCTCGTCCTAAGATGAAGGTTTGCATGCTTGGAGATGCTCAGCATGTTGAAGAGGCAGAAAAGATAGGTTTGGAATACATGGATGTGGAGGGGCTGAAGAAGCTCAACAAGAACAAGAAGTTGGTGAAGAAGCTTGCAAAGAAATACCATGCTTTCTTAGCATCTGAGGCCGTAATCAAGCAGATTCCCCGTCTTCTCGGCCCTGGTCTCAACAAGGCAGGGAAGTTCCCTACACTTGTTACTCACCAAGAATCCCTCGAGTCTAAAGTGAACGAGATCAAGGCCACCGTAAAGTTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTTGCTGTTGGGAACTGCAGCATGGAAGAGAAACAGATCTTTCAAAATGTGCAGATGAGCGTCAACTTCCTTGTTTCTTTGTTGAAGAAAAACTGGCAAAATGTGAGGTGCTTGTACCTGAAGAGTACCATGGGGAAGCCAGTGCGCATCTTTTAA

Network for GWHGAAZE001070

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00687.22	Ribosomal_L1	30	217	1.80E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02865	RP-L10Ae, RPL10A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015934	cellular_component	large ribosomal subunit
GO:0003723	molecular_function	RNA binding
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	407.205
	SRR3591706	second leaf	159.252
	SRR3591707	mature leaf	104.813
	SRR3591708	Shoot apex	537.633
	SRR3591709	Stem	230.891
	SRR3591710	White floral bud	140.320
	SRR3591711	White flower	159.038
	SRR3591712	Green floral bud	266.676
	SRR3591713	Yellow flower	95.748
SRP173429	SRR8316895	Juvenile bud stage	164.459
	SRR8316896	Juvenile bud stage	231.655
	SRR8316897	Juvenile bud stage	120.206
	SRR8316894	Third green stage	88.997
	SRR8316900	Third green stage	265.548
	SRR8316901	Third green stage	248.245
	SRR8316898	Complete white stage	42.164
	SRR8316899	Complete white stage	232.316
	SRR8316903	Complete white stage	62.198
	SRR8316902	Silver flowering stage	48.034
	SRR8316904	Silver flowering stage	40.612
	SRR8316905	Silver flowering stage	17.194
	SRR8316906	Gold flowering stage	72.626
	SRR8316907	Gold flowering stage	64.871
	SRR8316908	Gold flowering stage	94.436
SRP132670	SRR6706286	Control	150.494
	SRR6706287	Light intensity 50%	227.519
	SRR6706288	Light intensity 20%	240.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	285.558
	CNS0095593	Slightly white alabastrum(diploid) 2	339.442
	CNS0095594	Slightly white alabastrum(diploid) 3	252.896
	CNS0095595	Whole white alabastrum(diploid) 2	238.081
	CNS0095596	Whole white alabastrum(diploid) 3	276.268
	CNS0095597	Whole white alabastrum(diploid) 4	185.494
	CNS0095598	Silvery flower (diploied) 1	150.443
	CNS0095599	Silvery flower (diploied) 2	122.584
	CNS0095600	Silvery flower (diploied) 3	82.708
	CNS0095601	Golden flower (diploid) 1	125.188
	CNS0095602	Golden flower (diploid) 2	81.834
	CNS0095603	Golden flower (diploid) 3	90.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	267.363
	CNS0095605	Slightly white alabastrum(tetraploid) 2	257.312
	CNS0095606	Slightly white alabastrum(tetraploid) 3	329.421
	CNS0095607	Whole white alabastrum(tetraploid) 1	141.197
	CNS0095608	Whole white alabastrum(tetraploid) 2	141.956
	CNS0095609	Whole white alabastrum(tetraploid) 3	249.814
	CNS0095610	Silvery flower (tetraploid) 1	87.195
	CNS0095611	Silvery flower (tetraploid) 2	82.687
	CNS0095612	Silvery flower (tetraploid) 3	51.380
	CNS0095613	Golden flower (tetraploid) 1	43.434
	CNS0095614	Golden flower (tetraploid) 2	58.141
	CNS0095615	Golden flower (tetraploid) 3	32.714
CRA001975	CRR073297	Stem 1	320.993
	CRR073298	Stem 2	321.036
	CRR073299	Stem 3	374.115
	CRR073300	Leaf 1	300.751
	CRR073301	Leaf 2	328.300
	CRR073302	Leaf 3	454.807
	CRR073303	Juvenile bud 1	318.158
	CRR073304	Juvenile bud 2	205.522
	CRR073305	Juvenile bud 3	226.738
	CRR073306	Third green 1	33.055
	CRR073307	Third green 2	42.086
	CRR073308	Third green 3	47.590
	CRR073309	Second white 1	42.589
	CRR073310	Second white 2	34.366
	CRR073311	Second white 3	17.945
	CRR073312	Silver flowering 1	36.905
	CRR073313	Silver flowering 2	41.747
	CRR073314	Silver flowering 3	39.265
	CRR073315	Gold flowering 1	151.321
	CRR073316	Gold flowering 2	170.569
	CRR073317	Gold flowering 3	148.809
	CRR073318	Tawny withering 1	343.378
	CRR073319	Tawny withering 2	284.536
	CRR073320	Tawny withering 3	331.954