Gene detail

Detail information of GWHGAAZE001050

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007207464.1	0	hypothetical protein PRUPE_ppa005989mg [Prunus persica]
Swissprot	tr\|Q9ZNT0\|VPS4_ARATH	0	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|M5WHD1\|M5WHD1_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ08663.1}
TAIR10	AT2G27600.1	1E-155	AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	23387774	23402812	+
GWHAAZE00000001	mRNA	23387774	23402812	+
GWHAAZE00000001	exon	23387774	23388077	+
GWHAAZE00000001	exon	23388758	23388927	+
GWHAAZE00000001	exon	23389124	23389163	+
GWHAAZE00000001	exon	23391350	23391455	+
GWHAAZE00000001	exon	23397322	23397520	+
GWHAAZE00000001	exon	23399858	23399956	+
GWHAAZE00000001	exon	23400047	23400202	+
GWHAAZE00000001	exon	23402711	23402812	+
GWHAAZE00000001	CDS	23387774	23388077	+
GWHAAZE00000001	CDS	23388758	23388927	+
GWHAAZE00000001	CDS	23389124	23389163	+
GWHAAZE00000001	CDS	23391350	23391455	+
GWHAAZE00000001	CDS	23397322	23397520	+
GWHAAZE00000001	CDS	23399858	23399956	+
GWHAAZE00000001	CDS	23400047	23400202	+
GWHAAZE00000001	CDS	23402711	23402812	+

Transcript Sequence
>GWHTAAZE001052 ATGTACAGCAATTTCAAAGAACAGGCGATCGAGTACGTGAAGCAAGCTGTACAGGAAGATAACGCCGGCAATTATGCCAAGGCCTTCCCACTTTACATGAACGCCTTGGAGTACTTCAAGACTCACCTCAAGTACGAGAAAAACCCTAAGATCAAGGAGGCTATCACGCAGAAATTCACCGAGTATCTCCGCCGTGCCGAGGAGATCAGGGCCGTGTTGGATGATGGCGGTGCCGGACCGGCAGCCAACGGTGGGGATGCTGCGGTGGCGGCGAAGCCGAAGACGAAGCCGAAAGATGGAGAAGGTGGGGACGGGGAGGATCCGGAGCAGGCTAAGCTGAGGGCGGGGTTGAACTCAGCGATTGTTAGGGAGAAGCCTAATGTGAAGTGGAATGATGTAGCTGGATTAGAGAGCGCCAAGCAGGCGTTGCAAGAGGCTGTTATATTGCCAGTTAAATTCCCTCAGTTCTTTACGCTTAATGGTGGGAACGAGTTCAACTCGAAGGTATCTAAAGGCAAGAGGCGGCCATGGAGGGCTTTCCTTTTATATGGTCCACCTGGAACTGGAAAGTCATACTTAGCCAAGGCTGTCGCAACTGAAGCAGAATCTACATTCTTTAGTGTTTCATCATCAGATCTGGTGTCGAAGTGGATGGGTGAAAGTGAAAAGCTAGTCTCAAATCTTTTTGAAATGGCACGTGAAAGTGCTCCTTCCATTATCTTCGTTGATGAAATAGATTCATTATGTGGTCAGCGAGGAGAAGGCAATGAGAGTGAAGCTTCCAGACGTATTAAAACAGAACTTCTTGTGCAGATGCAGGTTCATTTAGGAGATCACATACATAATTTGACTGAAAGTGACTTTGAAGACTTGGGTCGTAAGACAGAAGGGTTTTCTGGTTCTGATGTTTCTGTTTGTGTTAAAGATGTGCTATTTGAACCTGTTCGTAAAACCCAAGATGCCATGTTCTTTGTTAAGACAAATGATGGTATGTGGGTGCCGTGTGGGCCAAAACAACCCGGTGCTGTCCAGACCACAATGCAGGAGCTTGCTGCAAAAGGACTTGCTTCACAGCCCGGCCGTCAGGCCGTTCAACATGCCCGGTTGAATAGTAGTCACGAAAATGCTCTCCGACTGAATTTCGTCCCCGCAAATCAACTTGAGAAGGAGGAGTGA

Network for GWHGAAZE001050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04212.19	MIT	7	70	2.40E-21
PF00004.30	AAA	181	273	1.10E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12196	VPS4	Endocytosis	map04144
K12196	VPS4	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.138
	SRR3591706	second leaf	10.533
	SRR3591707	mature leaf	11.684
	SRR3591708	Shoot apex	20.454
	SRR3591709	Stem	32.319
	SRR3591710	White floral bud	37.863
	SRR3591711	White flower	46.107
	SRR3591712	Green floral bud	31.721
	SRR3591713	Yellow flower	41.860
SRP173429	SRR8316895	Juvenile bud stage	15.978
	SRR8316896	Juvenile bud stage	21.191
	SRR8316897	Juvenile bud stage	14.453
	SRR8316894	Third green stage	8.851
	SRR8316900	Third green stage	21.867
	SRR8316901	Third green stage	23.617
	SRR8316898	Complete white stage	14.157
	SRR8316899	Complete white stage	32.200
	SRR8316903	Complete white stage	17.313
	SRR8316902	Silver flowering stage	15.757
	SRR8316904	Silver flowering stage	22.551
	SRR8316905	Silver flowering stage	12.265
	SRR8316906	Gold flowering stage	42.271
	SRR8316907	Gold flowering stage	35.720
	SRR8316908	Gold flowering stage	33.863
SRP132670	SRR6706286	Control	30.094
	SRR6706287	Light intensity 50%	31.254
	SRR6706288	Light intensity 20%	32.600
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.996
	CNS0095593	Slightly white alabastrum(diploid) 2	16.795
	CNS0095594	Slightly white alabastrum(diploid) 3	16.421
	CNS0095595	Whole white alabastrum(diploid) 2	13.600
	CNS0095596	Whole white alabastrum(diploid) 3	12.075
	CNS0095597	Whole white alabastrum(diploid) 4	10.730
	CNS0095598	Silvery flower (diploied) 1	19.904
	CNS0095599	Silvery flower (diploied) 2	15.420
	CNS0095600	Silvery flower (diploied) 3	33.254
	CNS0095601	Golden flower (diploid) 1	17.418
	CNS0095602	Golden flower (diploid) 2	27.687
	CNS0095603	Golden flower (diploid) 3	32.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.702
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.519
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.135
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.940
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.287
	CNS0095610	Silvery flower (tetraploid) 1	36.546
	CNS0095611	Silvery flower (tetraploid) 2	33.260
	CNS0095612	Silvery flower (tetraploid) 3	28.914
	CNS0095613	Golden flower (tetraploid) 1	23.335
	CNS0095614	Golden flower (tetraploid) 2	31.482
	CNS0095615	Golden flower (tetraploid) 3	38.234
CRA001975	CRR073297	Stem 1	26.443
	CRR073298	Stem 2	21.631
	CRR073299	Stem 3	25.135
	CRR073300	Leaf 1	27.128
	CRR073301	Leaf 2	29.653
	CRR073302	Leaf 3	30.841
	CRR073303	Juvenile bud 1	32.557
	CRR073304	Juvenile bud 2	26.369
	CRR073305	Juvenile bud 3	31.499
	CRR073306	Third green 1	26.239
	CRR073307	Third green 2	30.360
	CRR073308	Third green 3	29.059
	CRR073309	Second white 1	37.930
	CRR073310	Second white 2	31.335
	CRR073311	Second white 3	28.852
	CRR073312	Silver flowering 1	39.395
	CRR073313	Silver flowering 2	39.092
	CRR073314	Silver flowering 3	28.353
	CRR073315	Gold flowering 1	15.923
	CRR073316	Gold flowering 2	23.030
	CRR073317	Gold flowering 3	18.148
	CRR073318	Tawny withering 1	32.763
	CRR073319	Tawny withering 2	33.338
	CRR073320	Tawny withering 3	39.233