Gene detail

Detail information of GWHGAAZE001034

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010313337.1	0	PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase D6PK [Solanum lycopersicum]
Swissprot	tr\|Q39183\|D6KL2_ARATH	3E-146	Serine/threonine-protein kinase D6PKL2
trEMBL	tr\|M1CIP3\|M1CIP3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068252}
TAIR10	AT3G44610.1	5E-161	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	22380513	22385911	+
GWHAAZE00000001	mRNA	22380513	22385911	+
GWHAAZE00000001	exon	22380513	22381066	+
GWHAAZE00000001	exon	22385113	22385911	+
GWHAAZE00000001	CDS	22380513	22381066	+
GWHAAZE00000001	CDS	22385113	22385911	+

Transcript Sequence
>GWHTAAZE001036 ATGGAGCCATGGTCTATGGACGACCTGACCGACGACCTCCAAAGCATGAGCTTCAACTCCGCCACCACCGCCGCCACCGACATCCATCGCAGCACCTCCTCCGGCTCTGAAACCACCACCTGGAGAACCTCCTCCTCCACCCACTTCACCACCACCAAGCCCCACCCCCACCCCTCGGGCGACCCTTGCTGGGACTCCATCCGCTCAGCCGGTGGGCAAATCTCCCTATCGGACCTCCGCTTCCTCCACCGCCTCGGCGCCGGCGACATCGGCTCTGTCTTCCTCGCCGAGCTCAAATCCTCCCAATCAAACGACGCCGTATTCGCTGCTAAGGTGATGGACAAAAAGGAACTTGCTAGCCGTAATAAAGAAGGAAGGGCGAGGGTAGAAAGGGAAATTCTTGAAATGTTGGAACATCCTTTTTTGCCCACTCTCTATGCTTCCCTTGATTCCCCCAAATGGTCTTGTCTGCTCACCGAGTTCTGTCCCGGCGGCGACCTCCATGTTCTCCGGCAGCGGCAGCCCGGCAAGCGGTTCACTGAATCCGCCGTCAGGTTCTATGCATCAGAGGTGGTGGTGGCTCTAGAATATGTCCACATGATGGGCATAGTTTATCGCGATCTTAAGCCGGAAAACGTTTTAGTCCGATCAGACGGTCATATCATGCTCACGGATTTCGACCTATCTTTAAAATGTGACACGTCGACATCAACACCGGCCCAAGTAATCTCCAATAATAGTTCCACAGGCGCACCCCCGCAGGGTGATTATCATCTTGACCCACCCCCATTCACATCATCGTCGTGCATTTTACCTAGTTGTATAGTCCCAACCGTATCGTGTTTTCACCCTAAGCGTAGGCGAAAGAAGAAGCCAGGCCACCTCAATGGGCCAGAGTTTGTGGCCGAGCCGATTGATGTACGGTCCATGTCATTCGTTGGGACCCACGAATATCTGGCACCGGAGATTGTGTCCGGTGAGGGCCATGGTAGCCCCGTGGATTGGTGGACCTTAGGAATATTTATATTCGAATTATTTTATGGTGTGACCCCTTTTAGGGGAATGGATAATGAGTTAACCCTGGCTAATATTGTGGCTCGAGCCCTTGAGTTTCCAAAAGAGCCAACTTTGCCTAATACGGCTAAGGACTTGATATCTCAACTATTGGCTAAGGATCCGGAGAGGCGGCTCGGGTCTACTATGGGTGCATCGGCGATCAAGCACCATCCGTTCTTCCAAGGGGTCAATTGGGCGCTTTTGAGATGTACATCACCACCGTTCAAGCCGCCTCCATTTAATCGCGAGATCCTATCGGATGAGAGTTGCCCCGATACTCCGGTGGACTACTACTAG

Network for GWHGAAZE001034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	82	243	5.10E-33
PF00069.26	Pkinase	309	412	6.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.604
	SRR3591706	second leaf	3.522
	SRR3591707	mature leaf	7.348
	SRR3591708	Shoot apex	7.647
	SRR3591709	Stem	6.095
	SRR3591710	White floral bud	4.448
	SRR3591711	White flower	4.656
	SRR3591712	Green floral bud	9.580
	SRR3591713	Yellow flower	1.815
SRP173429	SRR8316895	Juvenile bud stage	7.264
	SRR8316896	Juvenile bud stage	11.083
	SRR8316897	Juvenile bud stage	2.341
	SRR8316894	Third green stage	3.885
	SRR8316900	Third green stage	10.739
	SRR8316901	Third green stage	10.979
	SRR8316898	Complete white stage	3.474
	SRR8316899	Complete white stage	18.938
	SRR8316903	Complete white stage	6.768
	SRR8316902	Silver flowering stage	2.899
	SRR8316904	Silver flowering stage	2.411
	SRR8316905	Silver flowering stage	1.703
	SRR8316906	Gold flowering stage	5.152
	SRR8316907	Gold flowering stage	6.561
	SRR8316908	Gold flowering stage	3.035
SRP132670	SRR6706286	Control	15.715
	SRR6706287	Light intensity 50%	14.065
	SRR6706288	Light intensity 20%	13.567
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.178
	CNS0095593	Slightly white alabastrum(diploid) 2	7.106
	CNS0095594	Slightly white alabastrum(diploid) 3	7.406
	CNS0095595	Whole white alabastrum(diploid) 2	6.573
	CNS0095596	Whole white alabastrum(diploid) 3	3.218
	CNS0095597	Whole white alabastrum(diploid) 4	3.889
	CNS0095598	Silvery flower (diploied) 1	6.269
	CNS0095599	Silvery flower (diploied) 2	10.702
	CNS0095600	Silvery flower (diploied) 3	6.112
	CNS0095601	Golden flower (diploid) 1	6.940
	CNS0095602	Golden flower (diploid) 2	7.369
	CNS0095603	Golden flower (diploid) 3	7.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.051
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.805
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.965
	CNS0095610	Silvery flower (tetraploid) 1	1.898
	CNS0095611	Silvery flower (tetraploid) 2	4.119
	CNS0095612	Silvery flower (tetraploid) 3	2.530
	CNS0095613	Golden flower (tetraploid) 1	0.424
	CNS0095614	Golden flower (tetraploid) 2	1.581
	CNS0095615	Golden flower (tetraploid) 3	1.357
CRA001975	CRR073297	Stem 1	11.918
	CRR073298	Stem 2	12.442
	CRR073299	Stem 3	15.056
	CRR073300	Leaf 1	13.951
	CRR073301	Leaf 2	16.245
	CRR073302	Leaf 3	13.139
	CRR073303	Juvenile bud 1	13.296
	CRR073304	Juvenile bud 2	9.786
	CRR073305	Juvenile bud 3	22.283
	CRR073306	Third green 1	10.110
	CRR073307	Third green 2	9.519
	CRR073308	Third green 3	13.232
	CRR073309	Second white 1	3.077
	CRR073310	Second white 2	1.404
	CRR073311	Second white 3	1.711
	CRR073312	Silver flowering 1	0.931
	CRR073313	Silver flowering 2	1.958
	CRR073314	Silver flowering 3	0.720
	CRR073315	Gold flowering 1	7.812
	CRR073316	Gold flowering 2	10.675
	CRR073317	Gold flowering 3	10.888
	CRR073318	Tawny withering 1	4.115
	CRR073319	Tawny withering 2	4.748
	CRR073320	Tawny withering 3	4.181