Gene detail

Detail information of GWHGAAZE001020

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759515.1	1.1706E-171	PREDICTED: splicing factor U2af small subunit B-like [Nicotiana sylvestris]
Swissprot	tr\|Q9ZQW8\|U2AFA_ORYSJ	3E-131	Splicing factor U2af small subunit A
trEMBL	tr\|A0A061GZT2\|A0A061GZT2_THECC	4E-164	Zinc finger C-x8-C-x5-C-x3-H type family protein {ECO:0000313\|EMBL:EOY33579.1}
TAIR10	AT5G42820.2	3E-85	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	22033045	22035709	+
GWHAAZE00000001	mRNA	22033045	22035709	+
GWHAAZE00000001	exon	22033045	22033281	+
GWHAAZE00000001	exon	22034669	22034755	+
GWHAAZE00000001	exon	22034862	22034943	+
GWHAAZE00000001	exon	22035088	22035214	+
GWHAAZE00000001	exon	22035295	22035709	+
GWHAAZE00000001	CDS	22033045	22033281	+
GWHAAZE00000001	CDS	22034669	22034755	+
GWHAAZE00000001	CDS	22034862	22034943	+
GWHAAZE00000001	CDS	22035088	22035214	+
GWHAAZE00000001	CDS	22035295	22035709	+

Transcript Sequence
>GWHTAAZE001022 ATGGCGGAGCACTTGGCTTCGATCTTTGGGACCGAGAAGGACAGGGTGAACTGCCCGTTCTACTTCAAAATCGGAGCTTGTAGGCATGGCGATCGGTGTTCGAGGCTCCACACAAAGCCTAGCGTTAGCCCTACTCTTTTGCTATCTAACATGTATCAACGACCTGATATGATTACCCCTGGTGTTGATGCTCAGGGCCAACCTATCGATCCTCGAAAGATGCAGGAGCACTTTGAGGATTTCTATGAAGACCTTTTTGAGGAGCTGAACAAGTATGGAGAGATTGAGAGCTTGAATGTTTGTGACAATCTTGCTGACCACATGGTGGGTAACGTTTATGTTCAGTTCAGAGAAGAAGAGCATGCTGCAAATGCGCTAAAAAATCTAAGTGGAAGATATTATGCTGGCCGGCCTATCATTGTTGATTTCTCACCGGTCACCGATTTTCGTGAAGCCACATGTAGGCAATATGAGGAGAACAATTGTAATCGTGGAGGATATTGCAATTTTATGCATCTGAAAAGGATTGGCAGGGAATTGAGGAAACAGTTATTCGGTAGGTACCGGCGAAGACATAGCCGTAGCCGGAGCAGAAGTCCATATAGGCATCGGAGCTATGATGACCGCTCACATAGCAGCCGTAGTCATAGAAGGCACGATGATAGGGATTACTATCCTGAGAGCAGGAGCAGCAGGAGGTACAGGACCACCAGCCCCGATCATAGGAGAGGCCGAAGCAGGAGCCCGAGGTATGGTAGCCCAGATAGGGAAGGTAGTGAAGAGAGACGTGCTAAAATTGAGCAGTGGAACAGGGAAAAGGAACAAGCAGAGCTTGCTAACAGGGAAAATTATGCTGGAGTTGCCAACAATGAGAGCGATGGGTATACGCAAAATGCTGATCAATACTATGGCCAGCAGCAACCACAACAGAGTGGATATAGATACTGA

Network for GWHGAAZE001020

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	14	37	5.10E-07
PF00076.23	RRM_1	83	139	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12836	U2AF1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000398	biological_process	mRNA splicing, via spliceosome
GO:0089701	cellular_component	U2AF
GO:0046872	molecular_function	metal ion binding
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.583
	SRR3591706	second leaf	30.100
	SRR3591707	mature leaf	59.394
	SRR3591708	Shoot apex	45.264
	SRR3591709	Stem	69.444
	SRR3591710	White floral bud	53.463
	SRR3591711	White flower	60.576
	SRR3591712	Green floral bud	41.620
	SRR3591713	Yellow flower	69.566
SRP173429	SRR8316895	Juvenile bud stage	143.195
	SRR8316896	Juvenile bud stage	222.108
	SRR8316897	Juvenile bud stage	104.122
	SRR8316894	Third green stage	69.088
	SRR8316900	Third green stage	141.757
	SRR8316901	Third green stage	155.358
	SRR8316898	Complete white stage	81.497
	SRR8316899	Complete white stage	180.120
	SRR8316903	Complete white stage	150.550
	SRR8316902	Silver flowering stage	107.908
	SRR8316904	Silver flowering stage	146.863
	SRR8316905	Silver flowering stage	75.241
	SRR8316906	Gold flowering stage	252.695
	SRR8316907	Gold flowering stage	256.849
	SRR8316908	Gold flowering stage	215.111
SRP132670	SRR6706286	Control	191.597
	SRR6706287	Light intensity 50%	197.876
	SRR6706288	Light intensity 20%	179.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.248
	CNS0095593	Slightly white alabastrum(diploid) 2	71.162
	CNS0095594	Slightly white alabastrum(diploid) 3	60.302
	CNS0095595	Whole white alabastrum(diploid) 2	57.982
	CNS0095596	Whole white alabastrum(diploid) 3	40.625
	CNS0095597	Whole white alabastrum(diploid) 4	45.728
	CNS0095598	Silvery flower (diploied) 1	80.797
	CNS0095599	Silvery flower (diploied) 2	93.802
	CNS0095600	Silvery flower (diploied) 3	95.642
	CNS0095601	Golden flower (diploid) 1	112.742
	CNS0095602	Golden flower (diploid) 2	124.251
	CNS0095603	Golden flower (diploid) 3	119.722
	CNS0095604	Slightly white alabastrum(tetraploid) 1	108.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.839
	CNS0095606	Slightly white alabastrum(tetraploid) 3	229.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	57.888
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	145.934
	CNS0095610	Silvery flower (tetraploid) 1	197.756
	CNS0095611	Silvery flower (tetraploid) 2	130.087
	CNS0095612	Silvery flower (tetraploid) 3	133.731
	CNS0095613	Golden flower (tetraploid) 1	139.938
	CNS0095614	Golden flower (tetraploid) 2	175.276
	CNS0095615	Golden flower (tetraploid) 3	109.356
CRA001975	CRR073297	Stem 1	119.920
	CRR073298	Stem 2	94.941
	CRR073299	Stem 3	26.298
	CRR073300	Leaf 1	108.422
	CRR073301	Leaf 2	101.945
	CRR073302	Leaf 3	16.655
	CRR073303	Juvenile bud 1	14.997
	CRR073304	Juvenile bud 2	7.172
	CRR073305	Juvenile bud 3	20.670
	CRR073306	Third green 1	8.353
	CRR073307	Third green 2	4.968
	CRR073308	Third green 3	6.528
	CRR073309	Second white 1	6.722
	CRR073310	Second white 2	11.486
	CRR073311	Second white 3	7.404
	CRR073312	Silver flowering 1	7.150
	CRR073313	Silver flowering 2	6.061
	CRR073314	Silver flowering 3	6.365
	CRR073315	Gold flowering 1	13.609
	CRR073316	Gold flowering 2	21.323
	CRR073317	Gold flowering 3	7.042
	CRR073318	Tawny withering 1	25.800
	CRR073319	Tawny withering 2	29.741
	CRR073320	Tawny withering 3	30.571