Gene detail

Detail information of GWHGAAZE001013

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266630.1	PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Vitis vinifera]
Swissprot	tr\|Q9SGE0\|AXS2_ARATH	UDP-D-apiose/UDP-D-xylose synthase 2
trEMBL	tr\|D7TU58\|D7TU58_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34031.3}
TAIR10	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21826005	21832322	+
GWHAAZE00000001	mRNA	21826005	21832322	+
GWHAAZE00000001	exon	21826005	21826268	+
GWHAAZE00000001	exon	21826686	21826778	+
GWHAAZE00000001	exon	21826938	21827044	+
GWHAAZE00000001	exon	21828506	21828561	+
GWHAAZE00000001	exon	21830755	21830888	+
GWHAAZE00000001	exon	21831000	21831101	+
GWHAAZE00000001	exon	21831220	21831312	+
GWHAAZE00000001	exon	21831426	21831561	+
GWHAAZE00000001	exon	21832210	21832322	+
GWHAAZE00000001	CDS	21826005	21826268	+
GWHAAZE00000001	CDS	21826686	21826778	+
GWHAAZE00000001	CDS	21826938	21827044	+
GWHAAZE00000001	CDS	21828506	21828561	+
GWHAAZE00000001	CDS	21830755	21830888	+
GWHAAZE00000001	CDS	21831000	21831101	+
GWHAAZE00000001	CDS	21831220	21831312	+
GWHAAZE00000001	CDS	21831426	21831561	+
GWHAAZE00000001	CDS	21832210	21832322	+

Transcript Sequence
>GWHTAAZE001015 ATGGCGAGGGTAGATCTGGACGGAAAAACGATAAAGCCGATTACGATATGCATGATCGGCGCTGGAGGTTTCATCGGCTCGCATCTCTGCGAGAAGTTGATGAACGAGACTCAACACACAGTGTTGGCGGTGGACGTGTACAATGACAAGATCAAACACTTGCTTGAACCGGCTTCTAATCCTTGGAACGACCGCATCCAGTTCCACCGCATCAACATTAAGAACGATTCTCGCCTTGAAGGTCTCATTAAAATGGCGGATCTGACTATAAATCTTGCGGCCATCTGTACACCGGCGGATTACAATACACGTCCTCTCGATACAATTTACAGCAATTTCATTGATGCACTCCCTGTGGTCAAGTACTGTTCGGAGAACAACAAGCGACTAATTCACTTCTCTACTTGTGAAGTCTATGGGAAAACAATTGGTGCTTATCTTCCTAAAGATAACCCCTGCGGCAGGGTGGCAATGTGGCATTATCTATTGGGAAATCAGATTATCTCATGTGATTTTCTTGCCGAGGGTGCAGAAAATGGTCTCGAATTTACTATTGTGAGACCCTTTAACTGGATTGGTCCAAGGATGGATTTCATTCCTGGGATTGATGGTCCCAGTGAGGGTGTGCCCAGAGTTCTGGCATGCTTTAGCAATAATCTCCTTCGTGGTGAGCCACTCAAGCTTGTGGACGGTGGCCAATCACAAAGAACTTTTGTTTATATCAAGGATGCTATTGAAGCTGTGCTTTTGATGATTGAAAATCCAGCCAGGGCCAATGGCCATATATTCAATGTTGGGAACCCTAACAATGAAGTTACAGTCAGGCAGCTAGCAGAAATGATGACCAAGGTGTATTCGAAGGTAAGTGGAGAACCTTCTCTGGAAGTACCCACCATTGATGTAAGCTCCAAAGATTTTTATGGTGAAGGTTATGATGACAGTGACAAGAGAATCCCAGACATGACCATAATCAACAAACAACTTGGTTGGAACCCGAAAACATCACTATGGGACTTGCTGGAATCAACGCTTACCTATCAACATAGGACGTATGCCCAAGCGATCAAGCAGGCGATTGCAAAACCAGTTGCTAGTTAA

Network for GWHGAAZE001013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.22	Epimerase	16	266	4.60E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12449	AXS	Metabolic pathways	map01100
K12449	AXS	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	139.458
	SRR3591706	second leaf	337.095
	SRR3591707	mature leaf	174.967
	SRR3591708	Shoot apex	185.835
	SRR3591709	Stem	155.938
	SRR3591710	White floral bud	87.976
	SRR3591711	White flower	52.016
	SRR3591712	Green floral bud	144.716
	SRR3591713	Yellow flower	26.237
SRP173429	SRR8316895	Juvenile bud stage	116.698
	SRR8316896	Juvenile bud stage	143.018
	SRR8316897	Juvenile bud stage	59.525
	SRR8316894	Third green stage	48.945
	SRR8316900	Third green stage	138.400
	SRR8316901	Third green stage	153.897
	SRR8316898	Complete white stage	38.735
	SRR8316899	Complete white stage	145.394
	SRR8316903	Complete white stage	60.893
	SRR8316902	Silver flowering stage	13.593
	SRR8316904	Silver flowering stage	18.455
	SRR8316905	Silver flowering stage	6.557
	SRR8316906	Gold flowering stage	20.681
	SRR8316907	Gold flowering stage	21.959
	SRR8316908	Gold flowering stage	21.708
SRP132670	SRR6706286	Control	106.314
	SRR6706287	Light intensity 50%	121.664
	SRR6706288	Light intensity 20%	133.359
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	122.304
	CNS0095593	Slightly white alabastrum(diploid) 2	128.825
	CNS0095594	Slightly white alabastrum(diploid) 3	106.521
	CNS0095595	Whole white alabastrum(diploid) 2	110.359
	CNS0095596	Whole white alabastrum(diploid) 3	93.089
	CNS0095597	Whole white alabastrum(diploid) 4	92.606
	CNS0095598	Silvery flower (diploied) 1	130.280
	CNS0095599	Silvery flower (diploied) 2	137.534
	CNS0095600	Silvery flower (diploied) 3	65.411
	CNS0095601	Golden flower (diploid) 1	115.826
	CNS0095602	Golden flower (diploid) 2	85.069
	CNS0095603	Golden flower (diploid) 3	82.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	143.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	121.348
	CNS0095606	Slightly white alabastrum(tetraploid) 3	189.427
	CNS0095607	Whole white alabastrum(tetraploid) 1	104.530
	CNS0095608	Whole white alabastrum(tetraploid) 2	82.042
	CNS0095609	Whole white alabastrum(tetraploid) 3	140.804
	CNS0095610	Silvery flower (tetraploid) 1	46.659
	CNS0095611	Silvery flower (tetraploid) 2	50.489
	CNS0095612	Silvery flower (tetraploid) 3	30.638
	CNS0095613	Golden flower (tetraploid) 1	20.578
	CNS0095614	Golden flower (tetraploid) 2	36.130
	CNS0095615	Golden flower (tetraploid) 3	11.424
CRA001975	CRR073297	Stem 1	191.427
	CRR073298	Stem 2	190.612
	CRR073299	Stem 3	214.602
	CRR073300	Leaf 1	175.710
	CRR073301	Leaf 2	151.898
	CRR073302	Leaf 3	166.118
	CRR073303	Juvenile bud 1	148.169
	CRR073304	Juvenile bud 2	145.040
	CRR073305	Juvenile bud 3	133.961
	CRR073306	Third green 1	38.994
	CRR073307	Third green 2	46.285
	CRR073308	Third green 3	44.488
	CRR073309	Second white 1	18.219
	CRR073310	Second white 2	20.884
	CRR073311	Second white 3	12.295
	CRR073312	Silver flowering 1	11.065
	CRR073313	Silver flowering 2	19.241
	CRR073314	Silver flowering 3	14.375
	CRR073315	Gold flowering 1	124.253
	CRR073316	Gold flowering 2	133.034
	CRR073317	Gold flowering 3	108.293
	CRR073318	Tawny withering 1	94.517
	CRR073319	Tawny withering 2	97.067
	CRR073320	Tawny withering 3	117.054