Gene detail

Detail information of GWHGAAZE001010

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07004.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|P51567\|AFC2_ARATH	3E-27	Serine/threonine-protein kinase AFC2
trEMBL	tr\|A0A068UFM9\|A0A068UFM9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313\|EMBL:CDP07004.1}
TAIR10	AT3G44850.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21745819	21756226	+
GWHAAZE00000001	mRNA	21745819	21756226	+
GWHAAZE00000001	exon	21745819	21746022	+
GWHAAZE00000001	exon	21749476	21750459	+
GWHAAZE00000001	exon	21752606	21752702	+
GWHAAZE00000001	exon	21755090	21755137	+
GWHAAZE00000001	exon	21755835	21756226	+
GWHAAZE00000001	CDS	21745819	21746022	+
GWHAAZE00000001	CDS	21749476	21750459	+
GWHAAZE00000001	CDS	21752606	21752702	+
GWHAAZE00000001	CDS	21755090	21755137	+
GWHAAZE00000001	CDS	21755835	21756226	+

Transcript Sequence
>GWHTAAZE001012 ATGGCGGAGGAACGGAACGGAGATCGAAGCGAGACCAGCGATTATTACTCGTCGGAGGATGAAGGAACGGAGGATTACAGGAAAGGGGGCTACCATGCGGTTGAAATTGGCGATACGTTTAAGCATGGACGTTATGTCGTGCAGAGCAAGCTCGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGATACTCACAAATCTAGATATGTAGCATTGAAAGTTCAAAAGAGTGCCCAGCATTACACAGAGGCGGCAATGGATGAAATCACAATCCTAAAGCAGATAGCAGAGGGAGACCCTGATGACAAGAAGTGTGTTGTGAAACTTTTGGATCACTTTAAACATTCGGGGCCAAATGGGCAGCATGTTTGTATGGTTTTTGAGTACTTGGGTGATAATCTTCTGACCCTGATCAAGTATTCAGGCTATCGAGGGCTTTCTCTTAACATGGTTAAAGAAATTTGCTTCCACATTTTAGGGGGTTTGGACTACTTGCATAGCCAGCTTTCAATTATTCATACCGATTTGAAACCAGAGAATATATTGCTTTTGTCTATGATTGATCCAGCAAAAGATCCGAGGAAGTCAGGTGCACCTCTTATCCTCCCATCCAGTAAGGATAAGATTGTATCCAAGTCTGGCGCCTCCAAAGATGTTAGGGGTTCAAATGGTGACCTGACCAAGAACCAGAAAAAGAAGATACGGAAAAAGGCCAAGAAGGCGGCTCAAAATTGTGTGGAGAAGGAAGCTTCAGAGGAAACTGAACCAGATACCGAAACAACTGGTCCTGAAGATTCTCGTGATGATGAGAAGTCTAATATGGAAAATAGGGAAGAGCACTCCAGTAGATCAGCCCTGCAAGATAAATCAGCAAACACTACTGAAACAAGCGACATTTGTGAAGGAAAGAATGGTCGTAGGAGAGGGAGTCGCTCTGCAAGGCAGAAGCTGTTGGCTGAGATTGACTTTAAGTGCAAATTGGTTGATTTTGGTAATGCTTGTTGGACATATAAACAGTTTACTGGTGATATCCAGACAAGGCAATATAGGTGTCCAGAGGTTCTCCTGGGGTCCAAATACTCTACTTCAGCTGATCTATGGTCATTTGCTTGCATATGCTTTGAGCTAGCCACTGGTGATGTTCTCTTTGATCCTCATAGCGGTGACAACTATGACAGAGATGAGAGTGGGGTCTTATCTTTTGGTACTCCCGCTTTGGTACATCTTCCTGGTTTGAGATCTAAATCCGTTCCACAAAATCACACTCATTCATTGTGTAAGGGATCACTTGGCCCTGATGATGGAGCTTCTTGGAATGATGCCACGCAAGATTGCCTTAGGTGGCGCTATTCTCGGGAATTTTTCAACAGATACGGTGATTTGAGGCACATCCATCGCTTGCGTTTCTGGCCTCTAAACAAAGTGCTTATGGAGAAATACGAGTTCAGTGAGCAAGATGCAAGCGACCTGGCTGATTTCCTTATACCCATCCTCGAATTTGTCCCTGATAAAAGGCCTACAGCAGCACAATGCCTTGCTCATCCATGGATTACCGGAGGTCCTCAGCGTCTTGCACCTTCAAACCCTATACCTGCAGCAACTGAGGATGGTGTTTCCGAGAAGAAGAGAGAGAAGGATGAGAGAGATGCAATGGAGGCTGGAGTGGGGAATATGGCCATTGGTGGGGCTTCAAAGCCGGTAAACCCGCCAAAACAAACTTGA

Network for GWHGAAZE001010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	184	6.20E-21
PF00069.26	Pkinase	324	518	2.80E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_SRPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.529
	SRR3591706	second leaf	16.695
	SRR3591707	mature leaf	19.152
	SRR3591708	Shoot apex	24.103
	SRR3591709	Stem	33.686
	SRR3591710	White floral bud	26.793
	SRR3591711	White flower	35.140
	SRR3591712	Green floral bud	26.373
	SRR3591713	Yellow flower	33.277
SRP173429	SRR8316895	Juvenile bud stage	16.669
	SRR8316896	Juvenile bud stage	28.061
	SRR8316897	Juvenile bud stage	12.571
	SRR8316894	Third green stage	11.789
	SRR8316900	Third green stage	29.775
	SRR8316901	Third green stage	30.150
	SRR8316898	Complete white stage	13.198
	SRR8316899	Complete white stage	44.865
	SRR8316903	Complete white stage	24.548
	SRR8316902	Silver flowering stage	14.878
	SRR8316904	Silver flowering stage	22.833
	SRR8316905	Silver flowering stage	12.411
	SRR8316906	Gold flowering stage	40.825
	SRR8316907	Gold flowering stage	39.690
	SRR8316908	Gold flowering stage	44.206
SRP132670	SRR6706286	Control	27.322
	SRR6706287	Light intensity 50%	29.663
	SRR6706288	Light intensity 20%	29.528
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.112
	CNS0095593	Slightly white alabastrum(diploid) 2	17.097
	CNS0095594	Slightly white alabastrum(diploid) 3	16.902
	CNS0095595	Whole white alabastrum(diploid) 2	14.877
	CNS0095596	Whole white alabastrum(diploid) 3	13.272
	CNS0095597	Whole white alabastrum(diploid) 4	12.246
	CNS0095598	Silvery flower (diploied) 1	16.859
	CNS0095599	Silvery flower (diploied) 2	14.725
	CNS0095600	Silvery flower (diploied) 3	33.466
	CNS0095601	Golden flower (diploid) 1	16.551
	CNS0095602	Golden flower (diploid) 2	33.547
	CNS0095603	Golden flower (diploid) 3	32.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.223
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.904
	CNS0095610	Silvery flower (tetraploid) 1	37.251
	CNS0095611	Silvery flower (tetraploid) 2	37.090
	CNS0095612	Silvery flower (tetraploid) 3	29.556
	CNS0095613	Golden flower (tetraploid) 1	21.865
	CNS0095614	Golden flower (tetraploid) 2	31.720
	CNS0095615	Golden flower (tetraploid) 3	33.305
CRA001975	CRR073297	Stem 1	28.276
	CRR073298	Stem 2	25.373
	CRR073299	Stem 3	24.878
	CRR073300	Leaf 1	31.002
	CRR073301	Leaf 2	29.441
	CRR073302	Leaf 3	22.766
	CRR073303	Juvenile bud 1	25.625
	CRR073304	Juvenile bud 2	22.944
	CRR073305	Juvenile bud 3	36.575
	CRR073306	Third green 1	16.228
	CRR073307	Third green 2	15.948
	CRR073308	Third green 3	18.911
	CRR073309	Second white 1	21.784
	CRR073310	Second white 2	20.182
	CRR073311	Second white 3	21.527
	CRR073312	Silver flowering 1	23.556
	CRR073313	Silver flowering 2	24.883
	CRR073314	Silver flowering 3	21.155
	CRR073315	Gold flowering 1	10.626
	CRR073316	Gold flowering 2	11.991
	CRR073317	Gold flowering 3	15.501
	CRR073318	Tawny withering 1	28.460
	CRR073319	Tawny withering 2	19.547
	CRR073320	Tawny withering 3	29.487