Gene detail

Detail information of GWHGAAZE001004

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI17110.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q1PF50\|EDA2_ARATH	1E-12	Probable serine protease EDA2 (Precursor)
trEMBL	tr\|A5C9W6\|A5C9W6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN64374.1}
TAIR10	AT5G22860.1	8E-113	Serine carboxypeptidase S28 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21604844	21608133	+
GWHAAZE00000001	mRNA	21604844	21608133	+
GWHAAZE00000001	exon	21604844	21604994	+
GWHAAZE00000001	exon	21605751	21605884	+
GWHAAZE00000001	exon	21606251	21606363	+
GWHAAZE00000001	exon	21606878	21607118	+
GWHAAZE00000001	exon	21607325	21607480	+
GWHAAZE00000001	exon	21607594	21607673	+
GWHAAZE00000001	exon	21607847	21607896	+
GWHAAZE00000001	exon	21607997	21608133	+
GWHAAZE00000001	CDS	21604844	21604994	+
GWHAAZE00000001	CDS	21605751	21605884	+
GWHAAZE00000001	CDS	21606251	21606363	+
GWHAAZE00000001	CDS	21606878	21607118	+
GWHAAZE00000001	CDS	21607325	21607480	+
GWHAAZE00000001	CDS	21607594	21607673	+
GWHAAZE00000001	CDS	21607847	21607896	+
GWHAAZE00000001	CDS	21607997	21608133	+

Transcript Sequence
>GWHTAAZE001006 ATGGAAGAAGCCATGAAAAATGAGAGCAGTAGAGCTTACTTCAACTCTGCTCAAGCCATTGCTGATTATGCCGCTGTACTTTTACACATCAAGAAAAATTTATCTGCAGAGAATTCGCCAATTATTGTCATTGGAGGATCTTATGGAGGAATGCTAGCTTCATGGTTTAGGCTGAAGTATCCCCACATTGCAATGGGTGCACTGGCCTCATCAGCACCCATACTCTACTTTGATGGCGTCACTCCACAAAATGGTTATTATTCCATCGTCGCCAAAGATTTCAAAGAAGCTAGTGAGAGCTGTTACGAAACAATAAAAAAATCGTGGTGGGAAATTGATGAAATTGCTTCTAAGCCCAATGGTCTTTCAATCCTCACCAACAGATTCAATATTTGCACGCCATTGACGAATACTTCAAAGCTAAAGGACTTCTTAGATACAATGTACTCACAGGCAGCTCAATATAATAGACCACCAAATTATCCTGTGAGTGTGGTGTGTAAGGGAATTGATGGGGCCCCAAAAGGGAGTGATATTATTGACAAGATAATTAGTGGTATAGTTGCCTATGGAGGGAATACATCTTGCCGTGATATTAGAGATTATCAATCTCAAATAACTATTGGATGGGCATGGCAAACATGTAGTGAAATGGTGATGCCCATTGGGCGTGGTAGCAATGACACTATGTTCCAAGCGGCACCTTTCAACTTAACAAATTTTAACGATGACTGCACCAAGCGGTACGGAGTTTCACCTCGGCCTCATTGGGTCACAACTTACTATGGAGGTCAGGACATAAAGTTGGTTCTTAATAAGTTTGCTAGCAACATCATTTTCTCCAATGGCCTGAGAGATCCTTACAGCAGCGGCGGGGTGTTGAAGCACATATCCCCTAGTGTCCTTGCCATATCGACTATTAATGGATCACATTGTTTGGACATAGCACCAGCAAGGGAAACTGATCCAAAGTGGCTGGTCTTACAAAGGAAGATAGAAGTTGATATCATCAAACGATGGCTCAAGAAGTACTATGCTGATCTTTTTGCCTTCAAACACTAA

Network for GWHGAAZE001004

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05577.13	Peptidase_S28	12	331	6.20E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01285	PRCP	Renin-angiotensin system	map04614
K01285	PRCP	Protein digestion and absorption	map04974

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.108
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.135
	SRR3591712	Green floral bud	0.107
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.073
	SRR8316896	Juvenile bud stage	0.314
	SRR8316897	Juvenile bud stage	0.078
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.013
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.005
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.005
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.095
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.022
	SRR6706288	Light intensity 20%	0.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.116
	CNS0095593	Slightly white alabastrum(diploid) 2	0.089
	CNS0095594	Slightly white alabastrum(diploid) 3	0.047
	CNS0095595	Whole white alabastrum(diploid) 2	0.035
	CNS0095596	Whole white alabastrum(diploid) 3	0.020
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.008
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.072
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.067
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.013
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.120
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.006
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.007
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000