Gene detail

Detail information of GWHGAAZE001000

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007016021.1	Vacuolar protein sorting-associated protein 41 isoform 1 [Theobroma cacao]
Swissprot	tr\|P93231\|VPS41_SOLLC	Vacuolar protein sorting-associated protein 41 homolog
trEMBL	tr\|A0A061GUW5\|A0A061GUW5_THECC	Vacuolar protein sorting-associated protein 41 isoform 1 {ECO:0000313\|EMBL:EOY33640.1}
TAIR10	AT1G08190.1	vacuolar protein sorting 41

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21557998	21573153	+
GWHAAZE00000001	mRNA	21557998	21573153	+
GWHAAZE00000001	exon	21557998	21558123	+
GWHAAZE00000001	exon	21561043	21561312	+
GWHAAZE00000001	exon	21561425	21561535	+
GWHAAZE00000001	exon	21562233	21562520	+
GWHAAZE00000001	exon	21562835	21562967	+
GWHAAZE00000001	exon	21563126	21563216	+
GWHAAZE00000001	exon	21564977	21565062	+
GWHAAZE00000001	exon	21566048	21566094	+
GWHAAZE00000001	exon	21566234	21566337	+
GWHAAZE00000001	exon	21566416	21566509	+
GWHAAZE00000001	exon	21568382	21568537	+
GWHAAZE00000001	exon	21568620	21568682	+
GWHAAZE00000001	exon	21568805	21568870	+
GWHAAZE00000001	exon	21569007	21569207	+
GWHAAZE00000001	exon	21570304	21570381	+
GWHAAZE00000001	exon	21570470	21570589	+
GWHAAZE00000001	exon	21572429	21572509	+
GWHAAZE00000001	exon	21572613	21572698	+
GWHAAZE00000001	exon	21573018	21573153	+
GWHAAZE00000001	CDS	21557998	21558123	+
GWHAAZE00000001	CDS	21561043	21561312	+
GWHAAZE00000001	CDS	21561425	21561535	+
GWHAAZE00000001	CDS	21562233	21562520	+
GWHAAZE00000001	CDS	21562835	21562967	+
GWHAAZE00000001	CDS	21563126	21563216	+
GWHAAZE00000001	CDS	21564977	21565062	+
GWHAAZE00000001	CDS	21566048	21566094	+
GWHAAZE00000001	CDS	21566234	21566337	+
GWHAAZE00000001	CDS	21566416	21566509	+
GWHAAZE00000001	CDS	21568382	21568537	+
GWHAAZE00000001	CDS	21568620	21568682	+
GWHAAZE00000001	CDS	21568805	21568870	+
GWHAAZE00000001	CDS	21569007	21569207	+
GWHAAZE00000001	CDS	21570304	21570381	+
GWHAAZE00000001	CDS	21570470	21570589	+
GWHAAZE00000001	CDS	21572429	21572509	+
GWHAAZE00000001	CDS	21572613	21572698	+
GWHAAZE00000001	CDS	21573018	21573153	+

Transcript Sequence
>GWHTAAZE001002 ATGGGAGGCAGTGTCCCCTCCCTTCTATCAAACGACGCCGCTTCATGTATCGCCGTCGCAGAGAGGATGATCGCTCTCGGCACTCACGACGGTGCCGTACATATACTTGATTTCCTCGGCAATCAGGTTAAGGAGTTCCCTGCTCATACTGCTACTGTCAATGATCTTTGCTTTGACTTAGAAGGTGAATACATTGGAAGCTGTTCTGATGATGGATCTGTTGTAATAAACAGTCTGTTTACTGATGAGAAAATGAAATTTGAGTATCATCGCCCTATGAAAGCCCTTGCCATAGACCCAGATTATGCAAGACAATCATCCAGAAGATTTGCCACTGGTGGATTAGCTGGCCATTTGTTATTTAATATGAAAAAGTGGATAGGCTACCGTGACCAGGTTCTGCACTCTGGTGAAGGTCCAATCCATGCAGTAAAGTGGAGAGCAAGTCTCATAGCTTGGGCTAATGATGTTGGAGTTAAAGTTTATGATACAGCTACTGATCAGCGTCTTACTGTTTTTTTCCATCACATTCAGGATGACACTCTTTTGGTCATTGGCTGGGGAACATCTGTCAAAATTGCGTCTATTAGAATGAACGAGAACAAAGGCACCAATGGGACATATAGGAATATTCCCCTATCTAGCATGAACAAGGTGGATATCGTTGCATCTTTTCAAACCAGCTATTTCATTTCAGGGATTGCTCCTTTTGGTGATTCTTTGGTCGTTCTAGCTTATATACCGGGCGAAGAAGACAGAGAGAAGGAATTTAGCAGCTCTATTCCACCACGCCAGGGAAATGCTCAGAGACCAGAAGTTCGTGTCGTCACTTGGAATAATGATGAACTTGCAACAGATGCACTACCTGTACATGGCTTTGAGCATTATAAGGCGAAAGACTATTCCCTTGCTCATGCTCCATTCTCAGGTAGCAGCTACGCAGGTGGTCAATGGGCGGCTGGTGATGAACCATTGTACTATATTGTTTCACCAAAGGATGTAGTTATTGCAAAGCCTAGGGATGCAGAAGATCACATTGCCTGGCTTCTTCAACATGGATGGCATGAGAAAGCTTTAGCAGCCGTTGAAGCTGGAAAGGGCCGGAGTATATATATTGCCTGTAGCATAGCAGCTTCATTTGCATGGAAAATGGTGGGTTCGAGCTATCTTGACCATTTGATTGTGGAAAGGAAGTATGCTGAAGCTGCATCTTTATGCCCCAAATTGTTACGAGGATCACCTTCTGCTTGGGAGAGATGGGTTTTCCACTTCGCTCATCTTCGCCAGCTTCCTGTACTGGTTCCATATATTCCAACAGAGAACCCAAGATTACGTGATACTGCCTATGAGGTTGCTCTTGTAGCTCTGGCAACAAATCCATCTTTTCACAAGGAACTCCTGTCGACTGTTAAATCTTGGCCGCCTGTAATTTATTCTGCATTGCCTGTTATCTCAGCCATAGAACCTCAGCTTAATACTACATCAATGACAGATGCGCTTAAAGAGGCACTGGCTGAGTTATATGTCATTGATTCACAATATGAGAAAGCTTTTGCACTTTATGCTGATCTTATGAAGCCAGATATATTTGACTTCATCGAAAAACATAACTTGCATGACACAATTCGTGAAAAGGTTGTGCAACTGATGATGGTAGATAGCAAACATGCGACTTCATTGTTGATCCAGAACAGGGATCTAATTACTCCATCTGAAGTTGTTGCGCAACTTTTGGCTGCAAAGAGTAATAGCGATTCCAGATACTTTTTGTATCTCTATCTGCATTTACTTTTTGTAGCTAATCCCGATGCTGGAAGGGATTTCCATGACATGCAGGTTGAGCTATACGCTGACTATGATTCGAAGATGCTCCTTCCTTTCCTTCGCAACAGTCAGCATTATAGGCTTGAGAAGGCGTATGAAATTTGCGTAAGAAAAGATCTATTGAGAGAGCAAGTTTTCATCCTTGGAAGAATGGGAAATGCAAAACAAGCCCTTGCGGTTATCATTGATCAATTGGGGGACATCGAAGAGGCCATAGAGTTTGTGAGTATGCAGCATGATGATGAACTTTGGGAAGAATTGATACAACAATGTCTTCACAAACCTGAAATGGTAGGTGTACTGTTGGAGCATACTGTTGGCAATCTTGATCCTCTCTATATCGTAAATATAGTTCCCAATGGCTTAGAGATACCTCGGCTGAGGGATCGTTTAGTCAAAATCATCACAGATTACCGGACAGAAACCTCTCTCAGACATGGGTGTAATGCTATACTCAAGGTAAAACATCAGAATTCTTACATAAAGTTGCATCTAGGTTGCCAATTAGTTTAA

Network for GWHGAAZE001000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00637.21	Clathrin	562	704	9.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20184	VPS41	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0046907	biological_process	intracellular transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.550
	SRR3591706	second leaf	20.136
	SRR3591707	mature leaf	16.319
	SRR3591708	Shoot apex	25.028
	SRR3591709	Stem	31.145
	SRR3591710	White floral bud	33.784
	SRR3591711	White flower	27.780
	SRR3591712	Green floral bud	41.332
	SRR3591713	Yellow flower	21.359
SRP173429	SRR8316895	Juvenile bud stage	15.766
	SRR8316896	Juvenile bud stage	22.450
	SRR8316897	Juvenile bud stage	13.286
	SRR8316894	Third green stage	12.093
	SRR8316900	Third green stage	34.404
	SRR8316901	Third green stage	28.810
	SRR8316898	Complete white stage	12.657
	SRR8316899	Complete white stage	44.299
	SRR8316903	Complete white stage	20.715
	SRR8316902	Silver flowering stage	8.927
	SRR8316904	Silver flowering stage	14.841
	SRR8316905	Silver flowering stage	5.494
	SRR8316906	Gold flowering stage	12.925
	SRR8316907	Gold flowering stage	11.521
	SRR8316908	Gold flowering stage	14.288
SRP132670	SRR6706286	Control	23.064
	SRR6706287	Light intensity 50%	23.093
	SRR6706288	Light intensity 20%	25.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.279
	CNS0095593	Slightly white alabastrum(diploid) 2	12.772
	CNS0095594	Slightly white alabastrum(diploid) 3	8.703
	CNS0095595	Whole white alabastrum(diploid) 2	16.105
	CNS0095596	Whole white alabastrum(diploid) 3	14.748
	CNS0095597	Whole white alabastrum(diploid) 4	16.528
	CNS0095598	Silvery flower (diploied) 1	13.016
	CNS0095599	Silvery flower (diploied) 2	14.668
	CNS0095600	Silvery flower (diploied) 3	28.300
	CNS0095601	Golden flower (diploid) 1	11.054
	CNS0095602	Golden flower (diploid) 2	26.441
	CNS0095603	Golden flower (diploid) 3	23.852
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.167
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.856
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.645
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.425
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.723
	CNS0095610	Silvery flower (tetraploid) 1	29.551
	CNS0095611	Silvery flower (tetraploid) 2	25.861
	CNS0095612	Silvery flower (tetraploid) 3	27.871
	CNS0095613	Golden flower (tetraploid) 1	9.309
	CNS0095614	Golden flower (tetraploid) 2	20.022
	CNS0095615	Golden flower (tetraploid) 3	16.278
CRA001975	CRR073297	Stem 1	20.364
	CRR073298	Stem 2	17.116
	CRR073299	Stem 3	16.130
	CRR073300	Leaf 1	23.909
	CRR073301	Leaf 2	20.042
	CRR073302	Leaf 3	19.020
	CRR073303	Juvenile bud 1	22.339
	CRR073304	Juvenile bud 2	17.195
	CRR073305	Juvenile bud 3	32.188
	CRR073306	Third green 1	7.708
	CRR073307	Third green 2	10.131
	CRR073308	Third green 3	13.970
	CRR073309	Second white 1	6.605
	CRR073310	Second white 2	9.717
	CRR073311	Second white 3	6.979
	CRR073312	Silver flowering 1	10.561
	CRR073313	Silver flowering 2	16.409
	CRR073314	Silver flowering 3	13.641
	CRR073315	Gold flowering 1	9.754
	CRR073316	Gold flowering 2	15.189
	CRR073317	Gold flowering 3	9.428
	CRR073318	Tawny withering 1	21.401
	CRR073319	Tawny withering 2	15.994
	CRR073320	Tawny withering 3	21.424