Detail information of GWHGAAZE000993


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07022.10unnamed protein product [Coffea canephora]
Swissprottr|Q9FYC2|PAO_ARATH0Pheophorbide a oxygenase, chloroplastic (Precursor)
trEMBLtr|A0A068UFF4|A0A068UFF4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP07022.1}
TAIR10AT3G44880.10Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2131759421324179-
GWHAAZE00000001mRNA2131759421324179-
GWHAAZE00000001exon2132373321324179-
GWHAAZE00000001exon2132299921323234-
GWHAAZE00000001exon2132240721322533-
GWHAAZE00000001exon2132140321321539-
GWHAAZE00000001exon2132030021320459-
GWHAAZE00000001exon2131972221320000-
GWHAAZE00000001exon2131759421317779-
GWHAAZE00000001CDS2132373321324179-
GWHAAZE00000001CDS2132299921323234-
GWHAAZE00000001CDS2132240721322533-
GWHAAZE00000001CDS2132140321321539-
GWHAAZE00000001CDS2132030021320459-
GWHAAZE00000001CDS2131972221320000-
GWHAAZE00000001CDS2131759421317779-
Transcript Sequence

Network for GWHGAAZE000993

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00355.27Rieske981826.50E-20
PF08417.13PaO3074022.50E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13071PAO, ACD1 Biosynthesis of secondary metabolites map01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0051537molecular_function2 iron, 2 sulfur cluster binding
GO:0010277molecular_functionchlorophyllide a oxygenase [overall] activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.703
SRR3591706second leaf7.373
SRR3591707mature leaf28.724
SRR3591708Shoot apex13.942
SRR3591709Stem13.530
SRR3591710White floral bud17.482
SRR3591711White flower27.612
SRR3591712Green floral bud21.857
SRR3591713Yellow flower53.795
SRP173429 SRR8316895Juvenile bud stage 12.958
SRR8316896Juvenile bud stage 21.926
SRR8316897Juvenile bud stage 10.569
SRR8316894Third green stage 10.661
SRR8316900Third green stage 38.282
SRR8316901Third green stage 33.981
SRR8316898Complete white stage 15.910
SRR8316899Complete white stage 47.485
SRR8316903Complete white stage 35.068
SRR8316902Silver flowering stage18.498
SRR8316904Silver flowering stage27.056
SRR8316905Silver flowering stage15.472
SRR8316906Gold flowering stage 48.928
SRR8316907Gold flowering stage 44.333
SRR8316908Gold flowering stage 56.726
SRP132670SRR6706286Control60.913
SRR6706287Light intensity 50%59.266
SRR6706288Light intensity 20%63.011
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.577
CNS0095593Slightly white alabastrum(diploid) 213.301
CNS0095594Slightly white alabastrum(diploid) 314.077
CNS0095595Whole white alabastrum(diploid) 214.807
CNS0095596Whole white alabastrum(diploid) 315.190
CNS0095597Whole white alabastrum(diploid) 417.363
CNS0095598Silvery flower (diploied) 136.705
CNS0095599Silvery flower (diploied) 226.508
CNS0095600Silvery flower (diploied) 375.247
CNS0095601Golden flower (diploid) 137.468
CNS0095602Golden flower (diploid) 284.589
CNS0095603Golden flower (diploid) 380.924
CNS0095604Slightly white alabastrum(tetraploid) 122.254
CNS0095605Slightly white alabastrum(tetraploid) 217.666
CNS0095606Slightly white alabastrum(tetraploid) 339.610
CNS0095607Whole white alabastrum(tetraploid) 115.450
CNS0095608Whole white alabastrum(tetraploid) 217.110
CNS0095609Whole white alabastrum(tetraploid) 346.690
CNS0095610Silvery flower (tetraploid) 192.053
CNS0095611Silvery flower (tetraploid) 2116.042
CNS0095612Silvery flower (tetraploid) 3113.461
CNS0095613Golden flower (tetraploid) 176.430
CNS0095614Golden flower (tetraploid) 286.856
CNS0095615Golden flower (tetraploid) 374.492
CRA001975CRR073297Stem 135.654
CRR073298Stem 230.260
CRR073299Stem 326.982
CRR073300Leaf 150.448
CRR073301Leaf 249.783
CRR073302Leaf 340.688
CRR073303Juvenile bud 153.824
CRR073304Juvenile bud 252.613
CRR073305Juvenile bud 367.384
CRR073306Third green 138.145
CRR073307Third green 227.328
CRR073308Third green 328.713
CRR073309Second white 150.710
CRR073310Second white 260.562
CRR073311Second white 367.443
CRR073312Silver flowering 171.826
CRR073313Silver flowering 264.870
CRR073314Silver flowering 381.369
CRR073315Gold flowering 127.393
CRR073316Gold flowering 257.380
CRR073317Gold flowering 336.113
CRR073318Tawny withering 121.495
CRR073319Tawny withering 219.463
CRR073320Tawny withering 313.700