Gene detail

Detail information of GWHGAAZE000966

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002321618.1	hypothetical protein POPTR_0015s09220g [Populus trichocarpa]
Swissprot	tr\|Q96372\|CDC48_CAPAN	Cell division cycle protein 48 homolog
trEMBL	tr\|K4C9L4\|K4C9L4_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g074980.2.1}
TAIR10	AT5G03340.1	ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20609149	20613269	+
GWHAAZE00000001	mRNA	20609149	20613269	+
GWHAAZE00000001	exon	20609149	20609174	+
GWHAAZE00000001	exon	20609268	20609385	+
GWHAAZE00000001	exon	20609797	20609869	+
GWHAAZE00000001	exon	20609988	20610089	+
GWHAAZE00000001	exon	20610166	20610713	+
GWHAAZE00000001	exon	20611014	20611136	+
GWHAAZE00000001	exon	20611442	20611513	+
GWHAAZE00000001	exon	20611606	20611884	+
GWHAAZE00000001	exon	20612139	20612340	+
GWHAAZE00000001	exon	20612423	20612496	+
GWHAAZE00000001	exon	20613039	20613269	+
GWHAAZE00000001	CDS	20609149	20609174	+
GWHAAZE00000001	CDS	20609268	20609385	+
GWHAAZE00000001	CDS	20609797	20609869	+
GWHAAZE00000001	CDS	20609988	20610089	+
GWHAAZE00000001	CDS	20610166	20610713	+
GWHAAZE00000001	CDS	20611014	20611136	+
GWHAAZE00000001	CDS	20611442	20611513	+
GWHAAZE00000001	CDS	20611606	20611884	+
GWHAAZE00000001	CDS	20612139	20612340	+
GWHAAZE00000001	CDS	20612423	20612496	+
GWHAAZE00000001	CDS	20613039	20613269	+

Transcript Sequence
>GWHTAAZE000968 ATGACTGACCAAGAATCTTCCAACTTGAAAGGAGCAAAGAAGCCTAATCGGCTCGTTGTCGATGAGGCGGTAGATGATGATAACTCAGTTGTTGCAATGAACCCTATCACCATGGAGAAGTTGCAACTTTTCAGCGGCGATGCTCGTGTCCGTATATTACCGTTTAAAGATACCATAGAAGGTATCACTGGAGATTTATTTGACACGTACCTCAAACCCTACTTTATGGAGTCGAATCGCCCAGTGAGGAAAGAAGACTGTTTCCCCATTAGAGGAGGGATGAGAAGCATAGAATTCAAGGTCATCGACACCGACCTGGGTTGGATGAGGTCAGATATGATGACGTGGGGCGGTGTTAGCAAACAAATGGCGCAAATCCGTGAGTTGTTCGAGTTGCCATTAAGGCATCCCCAACTTTTTAAATCCCTTGGGGTGAAACCACCAAAAGGAATTTTACTTTACGGACCGCCTGGATCTGGAAAGACGTTGATAGCTAGGGCTGTCGCTAATGAAACTTGCGCTTTCTTCTTTTGCATTAACGAACCTGAAATTATGTCCAAAATGACTGGAGAAAGTGAAAGTAATATTCGAGAGGCATTCGAGGTGGCCGAGAAGAATGCCCTGTCAATCATTTTTATCGACGAAATCATTTCAATTGCTCCCAAGAGAGAGAAGACAAATGGTGAAGTTGAAAGTGGGATTGTTTCACAACTTTTGACTCTAATGGACAGACTGAAATCTCGGGCCCACGTTATTGTGATGGGGGCCACAAATCGTCCAAACAGCATTGACTCGGCTTTGAGAAGGTTTGGTAGGTTTGACTGGGAAATAGATATAGGTGTTCCTGATGAAGTTGGACGTCTTGAGGTTGATCTTGAAAGAGTTGCAAAAGACACCCATGGTTATGTGGGTGCGGACCTTGCTGCTCTCTGCACTGAAGCTGCACTTGTGTGCATCAGAGAGGTGATGGATGTGATCGATGTGGAGGACGTTGTTGAAGTGCCAAACGTCGGCTGGGGGGATACTGGAGGTCTTGAAAACGTCAAACGGGAGCTTCAAGAGATGGTTCAATACCCAGCGGAGTACCCAGAGATGTTCGAGAAATTCGGTTTGCCCCCCTCAAAGGGGGTTCTTTCCACCGTCCCCGGATGTGGCAAGACCCTATTGGCCAAGGCGATTGCTAACGAATGTCAAACCAACTTCATTAGTGTTAAAGGACCCGAGCTGCTTAACATGTGGTTTGGGCAGAGTGCAGCCAATGTTCGTGATATTTTTGACAAGGCTAGGCAATCTGCACCTTGTGTCCTATTCTTTGACGAGCTCGACTCCATTGCGACCCAGAGGGGATGCCATGGTGGAGGTGGAGATAACGCTGCTGATAGGGTTGTGAACCAGCTCTTGACTGAAATGGACGGCATGACCTCAAAGAAGACTGTTTTCATAATCGGGGCCACTAACAGACCCGACATAATTGACCCTGCAATTTTACGACCAGGCCGCCTTGATCAGTTGATATACATTCCACTTCCTGATGAAAAGTCCCGCTTCAGTGGGGCTGACATTACTGGAATTTGCCAGCGTGCCTGCAAGTATGCCATCAGAGAAAGCATCGAGAAAGACGTTGAGAAGGAGAAGAAGAGGGCAGAGAATCCTGACTCCTTGGAAGAGGATGAGGAAGCAGAAGCATTGGAGGAGATTACGGCTCCTCATTTTGAGGAGTCCATGAAGTACGCTCGTAGAAGTGTGAGTGATGCTGATATCCTTAAGTACAAATGGTTTGCCTGGACACTACAGCATTCCAGAGGCATCGGAACAGATTGCCGCTCCGTCGAATGGAACCGGGTCTGA

Network for GWHGAAZE000966

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	151	280	1.50E-40
PF17862.2	AAA_lid_3	290	330	2.40E-14
PF00004.30	AAA	378	509	2.60E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13525	VCP, CDC48	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.397
	SRR3591706	second leaf	6.140
	SRR3591707	mature leaf	4.850
	SRR3591708	Shoot apex	14.362
	SRR3591709	Stem	14.376
	SRR3591710	White floral bud	8.863
	SRR3591711	White flower	8.918
	SRR3591712	Green floral bud	11.095
	SRR3591713	Yellow flower	5.780
SRP173429	SRR8316895	Juvenile bud stage	9.619
	SRR8316896	Juvenile bud stage	13.476
	SRR8316897	Juvenile bud stage	6.981
	SRR8316894	Third green stage	5.254
	SRR8316900	Third green stage	11.105
	SRR8316901	Third green stage	12.127
	SRR8316898	Complete white stage	1.647
	SRR8316899	Complete white stage	10.273
	SRR8316903	Complete white stage	3.911
	SRR8316902	Silver flowering stage	2.644
	SRR8316904	Silver flowering stage	3.566
	SRR8316905	Silver flowering stage	1.745
	SRR8316906	Gold flowering stage	6.475
	SRR8316907	Gold flowering stage	6.331
	SRR8316908	Gold flowering stage	5.427
SRP132670	SRR6706286	Control	7.772
	SRR6706287	Light intensity 50%	8.536
	SRR6706288	Light intensity 20%	9.150
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.179
	CNS0095593	Slightly white alabastrum(diploid) 2	13.579
	CNS0095594	Slightly white alabastrum(diploid) 3	11.256
	CNS0095595	Whole white alabastrum(diploid) 2	7.873
	CNS0095596	Whole white alabastrum(diploid) 3	7.311
	CNS0095597	Whole white alabastrum(diploid) 4	8.497
	CNS0095598	Silvery flower (diploied) 1	11.688
	CNS0095599	Silvery flower (diploied) 2	8.493
	CNS0095600	Silvery flower (diploied) 3	6.265
	CNS0095601	Golden flower (diploid) 1	11.273
	CNS0095602	Golden flower (diploid) 2	7.191
	CNS0095603	Golden flower (diploid) 3	7.857
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.196
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.579
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.307
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.237
	CNS0095610	Silvery flower (tetraploid) 1	8.167
	CNS0095611	Silvery flower (tetraploid) 2	7.768
	CNS0095612	Silvery flower (tetraploid) 3	6.826
	CNS0095613	Golden flower (tetraploid) 1	6.013
	CNS0095614	Golden flower (tetraploid) 2	6.017
	CNS0095615	Golden flower (tetraploid) 3	3.836
CRA001975	CRR073297	Stem 1	14.696
	CRR073298	Stem 2	13.633
	CRR073299	Stem 3	2.815
	CRR073300	Leaf 1	13.590
	CRR073301	Leaf 2	14.929
	CRR073302	Leaf 3	2.616
	CRR073303	Juvenile bud 1	3.328
	CRR073304	Juvenile bud 2	0.387
	CRR073305	Juvenile bud 3	2.484
	CRR073306	Third green 1	0.166
	CRR073307	Third green 2	0.378
	CRR073308	Third green 3	0.457
	CRR073309	Second white 1	0.188
	CRR073310	Second white 2	1.032
	CRR073311	Second white 3	0.670
	CRR073312	Silver flowering 1	1.232
	CRR073313	Silver flowering 2	0.258
	CRR073314	Silver flowering 3	0.587
	CRR073315	Gold flowering 1	2.664
	CRR073316	Gold flowering 2	4.631
	CRR073317	Gold flowering 3	0.512
	CRR073318	Tawny withering 1	6.454
	CRR073319	Tawny withering 2	5.091
	CRR073320	Tawny withering 3	5.219