Detail information of GWHGAAZE000955


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006488039.16.02666E-45PREDICTED: cell division cycle protein 48 homolog [Citrus sinensis]
Swissprottr|Q96372|CDC48_CAPAN2E-46Cell division cycle protein 48 homolog
trEMBLtr|A0A067F9U4|A0A067F9U4_CITSI2E-45Uncharacterized protein {ECO:0000313|EMBL:KDO60202.1}
TAIR10AT5G03340.13E-40ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2043354720435570+
GWHAAZE00000001mRNA2043354720435570+
GWHAAZE00000001exon2043354720433591+
GWHAAZE00000001exon2043521420435570+
GWHAAZE00000001CDS2043354720433591+
GWHAAZE00000001CDS2043521420435570+
Transcript Sequence

Network for GWHGAAZE000955

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13525VCP, CDC48 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.094
SRR3591706second leaf4.264
SRR3591707mature leaf2.727
SRR3591708Shoot apex6.107
SRR3591709Stem6.230
SRR3591710White floral bud8.111
SRR3591711White flower5.208
SRR3591712Green floral bud5.064
SRR3591713Yellow flower4.934
SRP173429 SRR8316895Juvenile bud stage 3.061
SRR8316896Juvenile bud stage 2.884
SRR8316897Juvenile bud stage 3.026
SRR8316894Third green stage 1.580
SRR8316900Third green stage 4.496
SRR8316901Third green stage 3.664
SRR8316898Complete white stage 0.828
SRR8316899Complete white stage 3.314
SRR8316903Complete white stage 2.513
SRR8316902Silver flowering stage0.762
SRR8316904Silver flowering stage0.994
SRR8316905Silver flowering stage0.886
SRR8316906Gold flowering stage 1.697
SRR8316907Gold flowering stage 1.889
SRR8316908Gold flowering stage 1.801
SRP132670SRR6706286Control4.762
SRR6706287Light intensity 50%4.474
SRR6706288Light intensity 20%4.842
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.976
CNS0095593Slightly white alabastrum(diploid) 20.715
CNS0095594Slightly white alabastrum(diploid) 31.246
CNS0095595Whole white alabastrum(diploid) 22.098
CNS0095596Whole white alabastrum(diploid) 31.090
CNS0095597Whole white alabastrum(diploid) 41.180
CNS0095598Silvery flower (diploied) 12.800
CNS0095599Silvery flower (diploied) 22.378
CNS0095600Silvery flower (diploied) 33.199
CNS0095601Golden flower (diploid) 12.254
CNS0095602Golden flower (diploid) 23.193
CNS0095603Golden flower (diploid) 33.378
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.024
CNS0095610Silvery flower (tetraploid) 10.047
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.047
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.016
CRA001975CRR073297Stem 13.839
CRR073298Stem 22.365
CRR073299Stem 30.800
CRR073300Leaf 13.299
CRR073301Leaf 23.301
CRR073302Leaf 30.552
CRR073303Juvenile bud 11.203
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 31.936
CRR073306Third green 10.025
CRR073307Third green 20.234
CRR073308Third green 30.450
CRR073309Second white 10.030
CRR073310Second white 20.413
CRR073311Second white 30.007
CRR073312Silver flowering 10.178
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.444
CRR073317Gold flowering 30.023
CRR073318Tawny withering 10.400
CRR073319Tawny withering 21.850
CRR073320Tawny withering 32.422