Gene detail

Detail information of GWHGAAZE000949

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282437.1	PREDICTED: auxin response factor 18 [Vitis vinifera]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|F6GU14\|F6GU14_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT4G30080.1	auxin response factor 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20345458	20349008	+
GWHAAZE00000001	mRNA	20345458	20349008	+
GWHAAZE00000001	exon	20345458	20346516	+
GWHAAZE00000001	exon	20347641	20348524	+
GWHAAZE00000001	exon	20348699	20348764	+
GWHAAZE00000001	exon	20348927	20349008	+
GWHAAZE00000001	CDS	20345458	20346516	+
GWHAAZE00000001	CDS	20347641	20348524	+
GWHAAZE00000001	CDS	20348699	20348764	+
GWHAAZE00000001	CDS	20348927	20349008	+

Transcript Sequence
>GWHTAAZE000951 ATGAAAGTGGTAGAGAAGAGTTTAGATTCTCGGTTATGGCATGCTTGTGCCGGAGGCATGGTTCAAATGCCTGCAGTGAGCTCGAAGGTCTTCTATTTCCCTCAAGGTCATGCCGAACACGCCCTTGAAAATGTTGATTTTGGGGTTTTGCCTAGGGTTCCTGCTTTAATCCTTTGTAGGGTTTCTTTTGTAAAATTCATGGCAGACCCTGAGACTGATGAAGTTTTTGCCAAGATTGGGTTGACTCCGGTGGGTAACATCGAGCAAGAGTATGATGATGGATTTTTGGGGAGTAAGGGGTCTGAATCCCCTGAAAAACCCACTTCCTTTGCTAAAACGTTGACTCAATCGGATGCAAACAACGGTGGAGGGTTTTCCGTTCCTCGTTACTGTGCGGAGACAATCTTCCCTCGATTGGATTATGCAGCCGATCCCCCGGTTCAAACTGTGATTGCTAAGGATGTTCATGGAGAAATTTGGAAGTTTAGGCATATATATAGAGGGACACCAAGGAGGCATTTGTTGACAACAGGATGGAGTAATTTTGTGAACCAAAAGAAGCTAGTTGCTGGGGATTCGGTTGTGTTCATGAGAGCTGAAAACGGTGATCTTTGCATAGGAATTCGCCGGGCCAAGAGAGGTGGCATAGGCGGGGCCGAGTCTCTGTCTGGGTGGAGTTCTTCACCTGTAAACCGCGTTTCTGCTTATGGGGGATTCTCAGTCTTCTTGAGGGAAGATGATAATAAACTAATCAGAAGGGGGAGTTCAAAAGGAAGGGGGAAAGTGAGCCCCAAATCTGTTATCGAAGCTACAGCTCTTGCAGCCAGTGGGCAGCCTTTCGAGGTTGTTTATTATCCTCGAGCAAGCACTCCAGAGTTTTGTGTTAAGGCTTCTGTCCTAAGTGCTGCAATGAGGATTCATTGGTGCTCTGGAATGAGGTTCAAAATGGCCTTTGAAACAGAGGATTCTTCACGGATTAGCTGGTTCATGGGAACTATAGCTTCTGTTCAAGTTTCTGACCCCATCCACTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTAACATGGGATGAACCAGATCTGCTGCAAAATGTCAAACGGGTCAACCCGTGGCTGGTGGAATTAGTATCAAATACGCCCATCATTCATCTCTCACCTTTCTCTCCACCTAGAAAAAAGTTTCGGTTACCTCAACAACACCAAGATTTTCCATTCGACGGCCAATTTCCAATGCCGTCATTTTCAAACATCCCCCTCGGGCCCCGCAGTCCCTTTGTTTGTCCATCCGACAACTTACCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTAGGGATCCCCTTAGCAGATCCCCACCCTACCAACAACAAACTCCAGTTGGGTCTCTTCCTGTCTAGTTTCCAACTGGATCCACACGCTAAAATCACCAATGACATCATTCAAGGCCGATCAAACGACAACATTTCTTGCTTGCTAACCATGGGGAATTCCAGTCATAAGTTGGAGAAAACTGATGATGAAAAGGCTCCCCGTTTTTTACTCTTCGGTCAGCCAATACTTACTGAACAGCAAATCTCTGATGGCTGTTCTAGTGATGAATCTTCAAAAGTTCCAACGAAAAGTTCATCCAATGGGAATCAAGAAAAGGCCGATAGATCTTCACAAAACTGGTTGGGTATTAATGAAAATGTTTCCAGTACCAGGTTTTTGTGGGACCGAGGATTTTCCAATACTGATATCAGCCTTGATTATGGTCACTGCAAAGTATTCTTGCAGTCGGAGGATGTAGGACGGAATCTTGACCTCTCGGTTCTCAGGTCTTATGATGAGCTATGCGTAACGCTTGCAAATATGTTTGGAATAGAAAGATCTGAAATGCTGAGCCGTGTACTCTACAGAGATGCAACTGGTGCTGTTAAACAAGCTGGAGATGAACCATTCAGCGAGTTCATGAAAACCGCAAAAAGACTGACTATTTTGATGAATTCGGGCAGCAATAATATTGGAAGGAATTGGGTTACGGGTCTGCGAAATGCTGAACATGGACTGGATTCTTCGAACCCGACTGGACCCTTGAGCATATTTGCTTAG

Network for GWHGAAZE000949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	110	211	5.40E-22
PF06507.14	Auxin_resp	271	353	3.00E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.358
	SRR3591706	second leaf	14.348
	SRR3591707	mature leaf	12.120
	SRR3591708	Shoot apex	22.170
	SRR3591709	Stem	43.040
	SRR3591710	White floral bud	29.462
	SRR3591711	White flower	45.247
	SRR3591712	Green floral bud	28.462
	SRR3591713	Yellow flower	34.029
SRP173429	SRR8316895	Juvenile bud stage	21.085
	SRR8316896	Juvenile bud stage	28.492
	SRR8316897	Juvenile bud stage	10.809
	SRR8316894	Third green stage	13.961
	SRR8316900	Third green stage	40.449
	SRR8316901	Third green stage	34.055
	SRR8316898	Complete white stage	23.439
	SRR8316899	Complete white stage	49.464
	SRR8316903	Complete white stage	35.325
	SRR8316902	Silver flowering stage	20.649
	SRR8316904	Silver flowering stage	28.345
	SRR8316905	Silver flowering stage	12.262
	SRR8316906	Gold flowering stage	31.384
	SRR8316907	Gold flowering stage	34.816
	SRR8316908	Gold flowering stage	39.038
SRP132670	SRR6706286	Control	43.761
	SRR6706287	Light intensity 50%	48.225
	SRR6706288	Light intensity 20%	47.959
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.936
	CNS0095593	Slightly white alabastrum(diploid) 2	12.645
	CNS0095594	Slightly white alabastrum(diploid) 3	12.182
	CNS0095595	Whole white alabastrum(diploid) 2	10.604
	CNS0095596	Whole white alabastrum(diploid) 3	10.510
	CNS0095597	Whole white alabastrum(diploid) 4	8.784
	CNS0095598	Silvery flower (diploied) 1	13.446
	CNS0095599	Silvery flower (diploied) 2	15.146
	CNS0095600	Silvery flower (diploied) 3	32.921
	CNS0095601	Golden flower (diploid) 1	13.294
	CNS0095602	Golden flower (diploid) 2	18.239
	CNS0095603	Golden flower (diploid) 3	17.120
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.337
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.353
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.939
	CNS0095610	Silvery flower (tetraploid) 1	55.203
	CNS0095611	Silvery flower (tetraploid) 2	47.866
	CNS0095612	Silvery flower (tetraploid) 3	35.805
	CNS0095613	Golden flower (tetraploid) 1	19.899
	CNS0095614	Golden flower (tetraploid) 2	39.982
	CNS0095615	Golden flower (tetraploid) 3	15.349
CRA001975	CRR073297	Stem 1	30.282
	CRR073298	Stem 2	22.576
	CRR073299	Stem 3	15.636
	CRR073300	Leaf 1	36.718
	CRR073301	Leaf 2	31.520
	CRR073302	Leaf 3	16.443
	CRR073303	Juvenile bud 1	17.983
	CRR073304	Juvenile bud 2	22.957
	CRR073305	Juvenile bud 3	22.887
	CRR073306	Third green 1	8.699
	CRR073307	Third green 2	7.387
	CRR073308	Third green 3	9.371
	CRR073309	Second white 1	10.444
	CRR073310	Second white 2	12.181
	CRR073311	Second white 3	14.414
	CRR073312	Silver flowering 1	10.709
	CRR073313	Silver flowering 2	7.234
	CRR073314	Silver flowering 3	10.388
	CRR073315	Gold flowering 1	5.030
	CRR073316	Gold flowering 2	5.816
	CRR073317	Gold flowering 3	2.319
	CRR073318	Tawny withering 1	15.993
	CRR073319	Tawny withering 2	12.699
	CRR073320	Tawny withering 3	13.183