Gene detail

Detail information of GWHGAAZE000945

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094556.1	1.1199E-108	PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q3EBL9\|VP372_ARATH	1E-91	Vacuolar protein-sorting-associated protein 37 homolog 2
trEMBL	tr\|V4WHD4\|V4WHD4_9ROSI	5E-103	Uncharacterized protein {ECO:0000313\|EMBL:ESR66119.1}
TAIR10	AT3G53120.1	2E-56	Modifier of rudimentary (Mod(r)) protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20286926	20290487	+
GWHAAZE00000001	mRNA	20286926	20290487	+
GWHAAZE00000001	exon	20286926	20287146	+
GWHAAZE00000001	exon	20287648	20287735	+
GWHAAZE00000001	exon	20288380	20288419	+
GWHAAZE00000001	exon	20288852	20288898	+
GWHAAZE00000001	exon	20289001	20289121	+
GWHAAZE00000001	exon	20290324	20290487	+
GWHAAZE00000001	CDS	20286926	20287146	+
GWHAAZE00000001	CDS	20287648	20287735	+
GWHAAZE00000001	CDS	20288380	20288419	+
GWHAAZE00000001	CDS	20288852	20288898	+
GWHAAZE00000001	CDS	20289001	20289121	+
GWHAAZE00000001	CDS	20290324	20290487	+

Transcript Sequence
>GWHTAAZE000947 GGATCCCAAGAGCAACAAGCTCAGCCACGGCCGGAAATTTCAACAGACTCGTGGTATCCTCCATCTGTAGTTAGCTCACCGAGTTCTTCCTACCCTGCAACTCCTAGTAGCAGCAGCAATTCTAGCAGCTTCATACGAAGGCCTGGAGATCGGCCACAGTCTTTATCGCATGCTTTGCCTGCCGAGGCAGCTGGCATTGTTGCTTACGTAAAAGACAAGAGTGTTGATGAGTTACGGAAGCTTTTGTCTAACAAGGAAGCCTATCACCAATTCTTGCTTTCACTTGACTTGGTCAAAACTCAAAACAGTGTGAGGGATGAGCTACAGAATGAAACTCTGCAGCTTGCAAGAGAGAACTTGGAAAAAGAACTGCAGATAGTGGAGTTGAGGAATCAGTGCAGAATTATCCAGACAACAGAATTGGCTGCTGCCCGAGAGAAGCTAAATGAGCTAGAGAGGCGAAAGGAAGAGATCCTCAAGTTTTACTCTCCAGCGTCCATGCTCCATCGGCTTCAAGAGGAAATGAAAAAAACAGATGAGGAATCTGAAGCCCTCCACAGGCAGCTTCTCGAAGGAGAGATTGATTTGGCAGTTTTCGTGCAGAAGTATAAGAAGTTGCGCAACACTTACCATAGGCATGCACTCACCCACCTTGCAGCCAAGACGTCTTTGACTGGTTGA

Network for GWHGAAZE000945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07200.14	Mod_r	71	213	3.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12185	VPS37	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.723
	SRR3591706	second leaf	11.430
	SRR3591707	mature leaf	9.710
	SRR3591708	Shoot apex	19.418
	SRR3591709	Stem	20.803
	SRR3591710	White floral bud	20.484
	SRR3591711	White flower	20.369
	SRR3591712	Green floral bud	18.133
	SRR3591713	Yellow flower	19.524
SRP173429	SRR8316895	Juvenile bud stage	18.173
	SRR8316896	Juvenile bud stage	26.845
	SRR8316897	Juvenile bud stage	16.301
	SRR8316894	Third green stage	7.315
	SRR8316900	Third green stage	18.974
	SRR8316901	Third green stage	25.239
	SRR8316898	Complete white stage	8.446
	SRR8316899	Complete white stage	29.247
	SRR8316903	Complete white stage	13.855
	SRR8316902	Silver flowering stage	9.329
	SRR8316904	Silver flowering stage	9.405
	SRR8316905	Silver flowering stage	4.827
	SRR8316906	Gold flowering stage	22.337
	SRR8316907	Gold flowering stage	19.134
	SRR8316908	Gold flowering stage	23.102
SRP132670	SRR6706286	Control	19.647
	SRR6706287	Light intensity 50%	19.132
	SRR6706288	Light intensity 20%	18.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.628
	CNS0095593	Slightly white alabastrum(diploid) 2	26.907
	CNS0095594	Slightly white alabastrum(diploid) 3	29.516
	CNS0095595	Whole white alabastrum(diploid) 2	23.672
	CNS0095596	Whole white alabastrum(diploid) 3	14.411
	CNS0095597	Whole white alabastrum(diploid) 4	27.283
	CNS0095598	Silvery flower (diploied) 1	22.939
	CNS0095599	Silvery flower (diploied) 2	25.560
	CNS0095600	Silvery flower (diploied) 3	18.001
	CNS0095601	Golden flower (diploid) 1	25.596
	CNS0095602	Golden flower (diploid) 2	22.366
	CNS0095603	Golden flower (diploid) 3	24.197
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.589
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.327
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.318
	CNS0095610	Silvery flower (tetraploid) 1	16.709
	CNS0095611	Silvery flower (tetraploid) 2	15.893
	CNS0095612	Silvery flower (tetraploid) 3	18.165
	CNS0095613	Golden flower (tetraploid) 1	16.879
	CNS0095614	Golden flower (tetraploid) 2	12.661
	CNS0095615	Golden flower (tetraploid) 3	19.140
CRA001975	CRR073297	Stem 1	28.992
	CRR073298	Stem 2	29.185
	CRR073299	Stem 3	36.555
	CRR073300	Leaf 1	25.540
	CRR073301	Leaf 2	28.510
	CRR073302	Leaf 3	32.067
	CRR073303	Juvenile bud 1	21.678
	CRR073304	Juvenile bud 2	26.732
	CRR073305	Juvenile bud 3	25.597
	CRR073306	Third green 1	22.262
	CRR073307	Third green 2	23.386
	CRR073308	Third green 3	23.449
	CRR073309	Second white 1	17.783
	CRR073310	Second white 2	19.911
	CRR073311	Second white 3	19.564
	CRR073312	Silver flowering 1	32.736
	CRR073313	Silver flowering 2	24.543
	CRR073314	Silver flowering 3	34.470
	CRR073315	Gold flowering 1	15.108
	CRR073316	Gold flowering 2	29.987
	CRR073317	Gold flowering 3	22.221
	CRR073318	Tawny withering 1	44.388
	CRR073319	Tawny withering 2	56.228
	CRR073320	Tawny withering 3	32.617