Gene detail

Detail information of GWHGAAZE000943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010253724.1	8.7186E-165	PREDICTED: exosome complex component MTR3 isoform X1 [Nelumbo nucifera]
trEMBL	tr\|A0A061GX12\|A0A061GX12_THECC	1E-156	3'-5'-exoribonuclease family protein isoform 1 {ECO:0000313\|EMBL:EOY34400.1}
TAIR10	AT4G27490.1	6E-106	3'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20244627	20252071	+
GWHAAZE00000001	mRNA	20244627	20252071	+
GWHAAZE00000001	exon	20244627	20244903	+
GWHAAZE00000001	exon	20246741	20246819	+
GWHAAZE00000001	exon	20247653	20247755	+
GWHAAZE00000001	exon	20247906	20248026	+
GWHAAZE00000001	exon	20248378	20248466	+
GWHAAZE00000001	exon	20251470	20251619	+
GWHAAZE00000001	exon	20251988	20252071	+
GWHAAZE00000001	CDS	20244627	20244903	+
GWHAAZE00000001	CDS	20246741	20246819	+
GWHAAZE00000001	CDS	20247653	20247755	+
GWHAAZE00000001	CDS	20247906	20248026	+
GWHAAZE00000001	CDS	20248378	20248466	+
GWHAAZE00000001	CDS	20251470	20251619	+
GWHAAZE00000001	CDS	20251988	20252071	+

Transcript Sequence
>GWHTAAZE000945 AGAAAAGTGCGCACAGCGAAAAGCTTTTCTCCACAGAGAAGAACTCACTCTTCCAACTTCCTTGAGAAGCGGAAGAAGAAGCAATATATTTATTATATATATATATAGAGAGAGAGAGAGTTAGGGAAGGAGAGGGATATGGCCGGAAAACCTACCACAGCTCCGGCAACATACTCTCCGTCGCCGACGACGCGGAGCAAGAAGAAACCGCCTATTTTCACCGACGCCGATTGGATTAGACCTGACGGTCGCGGTTTTCAACAGTGCAGACCTGCCTTTCTAAGGACTGGTGCAGTAAATGCCGCTTCAGGTTCTGCTTATGCAGAGTTTGGAAATACCAAGGTCATTGTGTCGGTATTCGGGCCAAGGGAAAGTAAGAAAGCAATGATGTACAGCGATATAGGTCGTTTGAACTGTAATGTCAGTTATACAACTTTTGCCACCCCAGTTCGTGGACAGGGGCCAGACTGTAAAGAATTTTCCTCAATGCTACATAAAGCGTTGGAGGGTGCAATTATAGTGGATACCTTCCCTAAGACAACTGTAGATGTTTTCGCATTGGTGTTGGAATCTGGAGGTGGTGATCTTCCTGTGGTGATATCGTGTGCAAGTATTGCTCTAGCGGATGCTGGGATTATGATGTATGACTTGGTTGCCTCGGTTTCTGTGTCTTGTCTAGGGAAGAACCTTGTAATTGATCCGATTTCAGAAGAAGAAAGGTACCAAGATGGAAGCCTAATGATAACTTGTTTGCCATCTCGAAATGAGGTCACTCAGCTCACAGTCTCTGGAGAATGGTCAACCCCTAAGATTCACGAGGCAATGGAGCTGTGCCTCGATGCTTGCTCCAAACTCGGGAAGATCATGAGGTCGTGTTTGAAGGAAGCTGCTTCTGCTTCGTAA

Network for GWHGAAZE000943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	87	211	2.30E-27
PF03725.16	RNase_PH_C	215	277	2.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12587	MTR3, EXOSC6	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.134
	SRR3591706	second leaf	8.607
	SRR3591707	mature leaf	10.020
	SRR3591708	Shoot apex	24.515
	SRR3591709	Stem	21.424
	SRR3591710	White floral bud	24.268
	SRR3591711	White flower	33.053
	SRR3591712	Green floral bud	35.187
	SRR3591713	Yellow flower	37.727
SRP173429	SRR8316895	Juvenile bud stage	24.230
	SRR8316896	Juvenile bud stage	38.938
	SRR8316897	Juvenile bud stage	18.112
	SRR8316894	Third green stage	13.190
	SRR8316900	Third green stage	42.485
	SRR8316901	Third green stage	49.596
	SRR8316898	Complete white stage	17.694
	SRR8316899	Complete white stage	46.563
	SRR8316903	Complete white stage	23.602
	SRR8316902	Silver flowering stage	16.227
	SRR8316904	Silver flowering stage	19.945
	SRR8316905	Silver flowering stage	11.651
	SRR8316906	Gold flowering stage	28.300
	SRR8316907	Gold flowering stage	35.242
	SRR8316908	Gold flowering stage	32.334
SRP132670	SRR6706286	Control	30.274
	SRR6706287	Light intensity 50%	31.072
	SRR6706288	Light intensity 20%	34.433
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.626
	CNS0095593	Slightly white alabastrum(diploid) 2	39.526
	CNS0095594	Slightly white alabastrum(diploid) 3	39.308
	CNS0095595	Whole white alabastrum(diploid) 2	36.925
	CNS0095596	Whole white alabastrum(diploid) 3	43.174
	CNS0095597	Whole white alabastrum(diploid) 4	35.339
	CNS0095598	Silvery flower (diploied) 1	14.926
	CNS0095599	Silvery flower (diploied) 2	20.497
	CNS0095600	Silvery flower (diploied) 3	25.173
	CNS0095601	Golden flower (diploid) 1	17.801
	CNS0095602	Golden flower (diploid) 2	19.265
	CNS0095603	Golden flower (diploid) 3	20.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.068
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.220
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.347
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.553
	CNS0095610	Silvery flower (tetraploid) 1	26.288
	CNS0095611	Silvery flower (tetraploid) 2	21.645
	CNS0095612	Silvery flower (tetraploid) 3	19.125
	CNS0095613	Golden flower (tetraploid) 1	18.220
	CNS0095614	Golden flower (tetraploid) 2	22.403
	CNS0095615	Golden flower (tetraploid) 3	16.730
CRA001975	CRR073297	Stem 1	36.943
	CRR073298	Stem 2	36.783
	CRR073299	Stem 3	31.295
	CRR073300	Leaf 1	40.931
	CRR073301	Leaf 2	39.047
	CRR073302	Leaf 3	43.380
	CRR073303	Juvenile bud 1	45.854
	CRR073304	Juvenile bud 2	43.933
	CRR073305	Juvenile bud 3	30.544
	CRR073306	Third green 1	18.469
	CRR073307	Third green 2	19.178
	CRR073308	Third green 3	19.192
	CRR073309	Second white 1	25.100
	CRR073310	Second white 2	26.488
	CRR073311	Second white 3	21.576
	CRR073312	Silver flowering 1	18.747
	CRR073313	Silver flowering 2	21.546
	CRR073314	Silver flowering 3	22.494
	CRR073315	Gold flowering 1	19.707
	CRR073316	Gold flowering 2	17.741
	CRR073317	Gold flowering 3	13.780
	CRR073318	Tawny withering 1	35.816
	CRR073319	Tawny withering 2	27.810
	CRR073320	Tawny withering 3	29.116