Gene detail

Detail information of GWHGAAZE000942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651185.1	1.0207E-156	PREDICTED: receptor-like serine/threonine-protein kinase NCRK [Vitis vinifera]
Swissprot	tr\|Q8VYY5\|NCRK_ARATH	1E-109	Receptor-like serine/threonine-protein kinase NCRK (Precursor)
trEMBL	tr\|D7SL06\|D7SL06_VITVI	4E-157	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16334.3}
TAIR10	AT2G28250.2	8E-93	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	20214250	20219092	+
GWHAAZE00000001	mRNA	20214250	20219092	+
GWHAAZE00000001	exon	20214250	20214528	+
GWHAAZE00000001	exon	20214836	20215132	+
GWHAAZE00000001	exon	20217599	20217949	+
GWHAAZE00000001	exon	20218609	20219092	+
GWHAAZE00000001	CDS	20214250	20214528	+
GWHAAZE00000001	CDS	20214836	20215132	+
GWHAAZE00000001	CDS	20217599	20217949	+
GWHAAZE00000001	CDS	20218609	20218914	+
GWHAAZE00000001	three_prime_UTR	20218915	20219092	+

Transcript Sequence
>GWHTAAZE000944 GAAGATCTTAACTCCGCCACCTCACAAATTCCTGCAGGATGTATCAACAAGGCTTTATTCTTGTTCAGAAGTAGAACAGGAACAGTACAGGGAACAATTATTCAGTTTTCATACTCTGAATTAGAAAGTGCAACCAATAATTTCTCTGTTTCTAACTTGATTGGAGTTGGGGGAAGCAGTCAAGTTTATCGTGGCCATCTCATTGATGGTAGAATTGTGGCAGTTAAGCGAATGAAAACTCTGGGTGGGCCCGATGCAGAATCTGCTCTTCTTAAAGAGATTGAGCTCATATCAAGACTTCATCATTGCCACGTGGTAACCTTAATCGGATACTGCTCTGAATACCATAGGAAACATGCGGAAAGGCTGCTAGTATTTGAGTACATGCCCAATGGCAACCTTAGAGAGTGTTTGGATACGGTTTCAGGGAAAGTTCTGGACTGGGGTGCTCGTGTTGAAGTTGCACTTGGAGCTGCCAGGGGCTTGGAATATCTCCATGAAGCTGCTGCGCCAAGAATTTTGCATAGAGATGTCAAATCCACAAACATTCTCTTGGACGGGAGTTGGAGAGCTAAGTTAACTGCCAATTCTAAAGCGTATTGTGTTTCACTTATTTCAGGGCTCTTGTATGCCACATTTCTTGATGATTCTTTTTATCAAAATTTGACTAAGATAGGTAATTTATTTATCTTAGTGCAGGCTATGCCTTGTTTGCAAGATAGTAGGCGAGTGATTTCGGAGTTACCAGATCCACGTTTGAAAGGGGATTTCCCAGAAGAAGAGATGCAGATAATGGCTTACTTAGCAAAGGAGTGCCTGTTGTTAGAGCCCGAATTACGACCAACCATGAGTGAAGTTGTTCAAATCCTTTCGACAGTAGCATCAGAGAAATCTCGAAGGAGAAACTTCCCCAAAAATATTTTTCGGAGCTGGTCCACTCGTGCCATGAAAAGTGAAGCAGAAACAGGCACGCCTAACCTACAAGTCGAGGGCCCCACTGTATTCGATGAGCTCAGAGGAATGTCAACCAATCAATGGTCACCACGTTGCTCATTACCTATAGACCGTACTCTCTGTGCTGCAAATGATGAGAGAGAGTATATAGAGAGAGTGATCGTCTTGACTTCAAATCCTAGAAGTTGTCGTTCCCAAGATGGTGAAGCACTGGACTTAACCGAACCCCGCTTGGAATCCTTCCAAGTGGGGGATATAGCAATTACCTCCCCATCATAACTAAAACTACTCAAGGCATAAGATTTACATGGTTAGGTCAGATTGACCTTATTGCACTCACAAAAGCAGTGATTTCACTATATTATCAAGGAAGAATTGCATTTACGTTCTCATCAGCTCGATAAGAGTCGCCGATTGGGAGTAAAAGAAAGAATTGGGAGTAGAAGAAAGAACTCAG

Network for GWHGAAZE000942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	49	193	3.20E-24

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XVI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.698
	SRR3591706	second leaf	1.484
	SRR3591707	mature leaf	0.554
	SRR3591708	Shoot apex	3.165
	SRR3591709	Stem	82.912
	SRR3591710	White floral bud	0.599
	SRR3591711	White flower	0.264
	SRR3591712	Green floral bud	1.337
	SRR3591713	Yellow flower	0.222
SRP173429	SRR8316895	Juvenile bud stage	7.455
	SRR8316896	Juvenile bud stage	22.734
	SRR8316897	Juvenile bud stage	9.173
	SRR8316894	Third green stage	8.617
	SRR8316900	Third green stage	4.840
	SRR8316901	Third green stage	7.705
	SRR8316898	Complete white stage	0.403
	SRR8316899	Complete white stage	0.561
	SRR8316903	Complete white stage	0.436
	SRR8316902	Silver flowering stage	0.098
	SRR8316904	Silver flowering stage	0.034
	SRR8316905	Silver flowering stage	0.101
	SRR8316906	Gold flowering stage	0.114
	SRR8316907	Gold flowering stage	0.318
	SRR8316908	Gold flowering stage	0.266
SRP132670	SRR6706286	Control	1.980
	SRR6706287	Light intensity 50%	1.661
	SRR6706288	Light intensity 20%	1.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.544
	CNS0095593	Slightly white alabastrum(diploid) 2	9.885
	CNS0095594	Slightly white alabastrum(diploid) 3	25.995
	CNS0095595	Whole white alabastrum(diploid) 2	3.016
	CNS0095596	Whole white alabastrum(diploid) 3	5.490
	CNS0095597	Whole white alabastrum(diploid) 4	1.332
	CNS0095598	Silvery flower (diploied) 1	0.618
	CNS0095599	Silvery flower (diploied) 2	0.108
	CNS0095600	Silvery flower (diploied) 3	0.168
	CNS0095601	Golden flower (diploid) 1	0.554
	CNS0095602	Golden flower (diploid) 2	0.303
	CNS0095603	Golden flower (diploid) 3	0.302
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.288
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.337
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.807
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.679
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.259
	CNS0095610	Silvery flower (tetraploid) 1	0.134
	CNS0095611	Silvery flower (tetraploid) 2	0.366
	CNS0095612	Silvery flower (tetraploid) 3	0.153
	CNS0095613	Golden flower (tetraploid) 1	0.054
	CNS0095614	Golden flower (tetraploid) 2	0.015
	CNS0095615	Golden flower (tetraploid) 3	0.317
CRA001975	CRR073297	Stem 1	9.051
	CRR073298	Stem 2	10.289
	CRR073299	Stem 3	4.309
	CRR073300	Leaf 1	3.119
	CRR073301	Leaf 2	5.401
	CRR073302	Leaf 3	3.495
	CRR073303	Juvenile bud 1	0.168
	CRR073304	Juvenile bud 2	0.169
	CRR073305	Juvenile bud 3	0.345
	CRR073306	Third green 1	0.156
	CRR073307	Third green 2	0.300
	CRR073308	Third green 3	0.094
	CRR073309	Second white 1	0.011
	CRR073310	Second white 2	0.197
	CRR073311	Second white 3	0.031
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.058
	CRR073314	Silver flowering 3	0.047
	CRR073315	Gold flowering 1	0.010
	CRR073316	Gold flowering 2	0.176
	CRR073317	Gold flowering 3	0.186
	CRR073318	Tawny withering 1	11.676
	CRR073319	Tawny withering 2	4.532
	CRR073320	Tawny withering 3	17.524