Gene detail

Detail information of GWHGAAZE000921

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07064.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FJH8\|NRT24_ARATH	High affinity nitrate transporter 2.4
trEMBL	tr\|A0A068UFU4\|A0A068UFU4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313\|EMBL:CDP07064.1}
TAIR10	AT5G60770.1	nitrate transporter 2.4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19597599	19600341	-
GWHAAZE00000001	mRNA	19597599	19600341	-
GWHAAZE00000001	exon	19600002	19600341	-
GWHAAZE00000001	exon	19599200	19599681	-
GWHAAZE00000001	exon	19598370	19598485	-
GWHAAZE00000001	exon	19597599	19598265	-
GWHAAZE00000001	five_prime_UTR	19600330	19600341	-
GWHAAZE00000001	CDS	19600002	19600329	-
GWHAAZE00000001	CDS	19599200	19599681	-
GWHAAZE00000001	CDS	19598370	19598485	-
GWHAAZE00000001	CDS	19597599	19598265	-

Transcript Sequence
>GWHTAAZE000923 GGTTTTCAAAAAATGGGTGACATTGAAGGATCGCCGGGAAGTTCAATGCACGGAGTCACCGGCAAAGAGCCTGTTTTGGCCTTCGCGGTGGCCTCGCCGATGGTGCCGACGGACACCACCGCGAAGTTTGATTTGCCAGTGGACTCTGAGCACAAGGCCAAGGTGTTCAAACTCTTTTCCTGTGGCAATCCTCACATGAGGACCTTCCACCTTTCTTGGATCTCTTTCTTCACTTGCTTCATTTCCACTTTTGCCGCTGCGCCGCTTGTACCTATTATTCGCGACAACCTCAACCTCACCAAATCCGACATTGGAAATGCCGGTGTCGCTTCGGTTTCAGGTAGTATTTTCTCTAGGCTCGTAATGGGAGCAGTTTGCGACCTCTTAGGCCCACGTTATGGCTGCGCGTTTGTCATGATGCTGTCGGCTCCAACTGTGTTTTCAATGTCGTTTGTGTCATCACCCGGTGGATACACGGCAGTCCGGTTCATGATAGGGTTCTCATTGGCGACGTTTGTGTCGTGCCAATATTGGATGAGTACCATGTTCAATGGAAAGATAATTGGGCTTGTTAATGGGACAGCAGCTGGATGGGGTAATATGGGGGGTGGTGCGACACAACTATTGATGCCATTGTTGTATGATATAATACAAAGAGTTGGTGCCACTCCTTTTACTGCTTGGAGATTGGCTTTCTTTATACCTGGGTGGCTTCATGTTATTATGGGTATTTTGGTCCTAACTCTTGGCCAAGACTTGCCTGATGGGAACCTGAGTGCCCTACAAAAGAAGGGTGAAGTTGCCAAGGATAAATTCTCTAAGATATTGTGGTATGCTGTGAAAAATTATAGGACATGGGTGTTTGTCCTCCTTTATGGCTACTCAATGGGTGTTGAATTATCAACTGATAATGTCATTGCTGAATACTTGTATGATAGGTTCGATCTAAAGCTTCACACGGCCGGGATAATAGCTGCCACATTTGGAATGGCGAATCTTATAGCTCGTCCCTTTGGTGGCTACGCCTCCGATTTTGCAGCTCGTCGATTTGGAATGAGAGGACGGCTCTGGACCCTCTGGATCCTCCAAACCCTAGGTGGAGTCTTCTGCATCCTCCTAGGCCGCTCTAATACCCTCCTAGTCGCGATCATAACTATGATAATCTTCTCAATCGGTGCTCAATCTGCTTGCGGAGCCACATTCGGCATAATCCCTTTTGTCTCCCGCCGCTCACTAGGCATCATCTCGGGTCTGGCTGGTGCCGGAGGAAATTTTGGTTCAGGCTTGACTCAGTTAATCTTCTTCTCGACCTCCAAATTCACAACTGCACAAGGAATTTCTTATATGGGAGTGATGATTGTGTGTTGTACTTTTCCTGTGATGCTGATACATTTCCCACAGTGGGGTAGTATGTTTTTTCCGGCAACAAAGGATATCGTTAAAGGGAGTGAAGAGAATTATTACGTGGCAGAGTGGACTGAGGAGGAAAAGCAGAAGGGCATGCACCAGGGGAGTCTTAAGTTTGCCGAGAATAGTCGGTCGGAGCGAGGCCGAAGAGTTGCCTCGGCTCCAACAACTCCAAGTTCAACCCCAACTCGTGTTTAA

Network for GWHGAAZE000921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07690.17	MFS_1	69	425	2.80E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02575	NRT, narK, nrtP, nasA	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005887	cellular_component	integral component of plasma membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.230
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.039
	SRR8316896	Juvenile bud stage	0.682
	SRR8316897	Juvenile bud stage	0.288
	SRR8316894	Third green stage	0.196
	SRR8316900	Third green stage	0.180
	SRR8316901	Third green stage	0.130
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.064
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.093
	SRR6706287	Light intensity 50%	0.035
	SRR6706288	Light intensity 20%	0.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.023
	CNS0095593	Slightly white alabastrum(diploid) 2	0.552
	CNS0095594	Slightly white alabastrum(diploid) 3	0.804
	CNS0095595	Whole white alabastrum(diploid) 2	0.643
	CNS0095596	Whole white alabastrum(diploid) 3	0.894
	CNS0095597	Whole white alabastrum(diploid) 4	0.732
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.120
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.905
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.671
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.756
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.517
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.917
	CRR073298	Stem 2	0.629
	CRR073299	Stem 3	2.163
	CRR073300	Leaf 1	0.295
	CRR073301	Leaf 2	0.230
	CRR073302	Leaf 3	0.313
	CRR073303	Juvenile bud 1	0.138
	CRR073304	Juvenile bud 2	0.102
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.252
	CRR073307	Third green 2	0.027
	CRR073308	Third green 3	0.039
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.030
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000