Gene detail

Detail information of GWHGAAZE000913

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07060.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P54774\|CDC48_SOYBN	Cell division cycle protein 48 homolog
trEMBL	tr\|A0A068UER4\|A0A068UER4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313\|EMBL:CDP07060.1}
TAIR10	AT5G03340.1	ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19424925	19429426	-
GWHAAZE00000001	mRNA	19424925	19429426	-
GWHAAZE00000001	exon	19424925	19425218	-
GWHAAZE00000001	exon	19425777	19426136	-
GWHAAZE00000001	exon	19426391	19426672	-
GWHAAZE00000001	exon	19426766	19426837	-
GWHAAZE00000001	exon	19427005	19427226	-
GWHAAZE00000001	exon	19427420	19428186	-
GWHAAZE00000001	exon	19428310	19428538	-
GWHAAZE00000001	exon	19429304	19429426	-
GWHAAZE00000001	CDS	19429304	19429426	-
GWHAAZE00000001	CDS	19428310	19428538	-
GWHAAZE00000001	CDS	19427420	19428186	-
GWHAAZE00000001	CDS	19427005	19427226	-
GWHAAZE00000001	CDS	19426766	19426837	-
GWHAAZE00000001	CDS	19426391	19426672	-
GWHAAZE00000001	CDS	19425777	19426136	-
GWHAAZE00000001	CDS	19424925	19425218	-

Transcript Sequence
>GWHTAAZE000915 ATGGCGCCGAATCGGTTCGTTGTCGATGAGTCTGTTAACAATGACGATAATTCTGTTGTTGCAATGCACCCTACCACCATGGATAAGTTGCAGTTTTTCAGTGGAGATGCTGTTTTGATCAAGGGCAAAAAAAGGAAAGATACCGTCTGCATAGCTCTCGCCGATGAGACATGTGATGAGCCCAAGATTAGAATGAACAAGGTTGTGAGAACGAATCTAAGGGTTAGACTTGGCGACGTTGTATCTGTGAAGCAGTGCCCAGATCTTAAATATGGACTGCGTGTCCATATATTGCCTTTGGAAGATACCATAGAAGGTCTACAAGGGGATCTGTTTGATGCATTCCTCAAACCTTACTTTATGGAGTCGAATCGCCCAGTGAGGAAAGGAGACTGTTTCCTTGTTAGAGGAGGTATGAGAAGCGTGGAATTCAAGGTCATCGAGACTGAACCAGGCAATTACTGCATTATTGGTCCGGATACCGAAGTCTTTTGTGATGGGGAGCCCATTAGAAGGGACGATGAGGATAGGTTGGACGAGGTTGGATATGATGATGTGGGTGGTGTTAGAAAACAGATGGTGCAAATCCGTGAATTGGTTGAATTGCCATTGAGGCACCCCCAACTTTTCAAATCTCTCGGGGTGAAACCACCTAAAGGAATTTTACTCTACGGACCGCCCGGAACTGGAAAGACGTTGATAGCTAGAGCCATCGCTAATGAAACTGGTGCTTTCTTCTTTTGCATTAACGGACCTGAAATTATGTCGAAAATGACTGGAGAAAGTGAAGGTAATCTTAGAGCAGCATTTGAGGAGGCCGAGAAGAATGCACCGTCAATCATTTTTATCGATGAGATCGATTCAATTGCTCCAAAGAGAGAGAAGATAAATGGCGAAGTTGAAATGAGGATTGTTTCACAACTTTTGACTCTAATGGACGGACTGAAATCTCGAGCCCATGTTATTGTGATAGGGGCCACAAATCGCCCTAACAGCATTGACCCTGCCTTGAGAAGGTTTGGTAGGTTTGACCGGGAAATAGATATCGGTGTTCCTGATGAAATTGGACGTCTTGAAGTTCTGCGTATTCATACCAAAAACATGAAGCTCTCTGAAGATGTTGATTTTGAAAGAGTTGCAAAAGACACCCATGGTTATGTGGGTGCAGACCTTGCTGCTCTCTGCGCCGAAGCTGCACTTGAGTGCATCAGAGAGGTGATGAATGTCATTGATATGGAGGAGGAAACTATCGATGCCGAAATTCTGAATTCAATGACTGTCACAAAGGAACATTTCCTTACTGCTCTTGGGGATAGCAACCCATCTGCTTTACGAGAGACTGTTGTTGAAGTGCCAAATATTGGCTGGGAGGATATTGGAGGCCTTGAAAATGTCAAACGGGAGCTTCAAGAGACTGTTCAGTACCCTGTGGAGTTCCCAGAGATGTTTGAGAAATTTGGCATGTCGCCTTCGAAGGGGGTTCTTTTCTATGGTCCTCCTGGATGTGGCAAGACCCTATTGGCCAAGGCAATTGCTAATGAGTGCCAAGCCAACTTCATCAGTGTTAAAGGGCCCGAGCTGCTTAATATGTGGTTTGGGCAGAGTGCAGCCAATGTTCGTGATATTTTTGACAAGGCTAGGCAATCTGCGCCATGTGTCCTCTTCTTTGACGAGCTTGACTCCATTGCAACCCAGAGGGGAAGCAATGGCGGAGGCGGAGATAACGCTGCTGATAGGGTTGTGAACCAGCTCTTGACCGAAATGGACGGCATGACCTCAAAGAAGACTGTTTTCATAATCGGGGCCACTAACAGACCCGACATAATTGACCCAGCAATTTTACGACCAGGCCGCCTTGATCAGTTGATATACATTCCACTTCCTGATGAAGAGTCCCGTCTCCAGGTTTTCAAGGCTTGCATGAGGAAATCCCCCGTCTCCAAGGACGTTGACTTGAGGACTCTTGCTAAATACACCGAAGGCTTTAGTGGGGCCGATATTACCGAAATTTGCCAGCGTGCCTGCAAGTATGCCATCAGAGAGAGCATCGAGAAAGACATTGAGAAGGAGAAGAAGAGGGCTGAGAATCCCAACTCTTTCGAAGTGGACGAGGAAGCAGAAGTGGCGGAAGAGATTACGGCTGCCCAATTTGAGGAGTCGATGAAGTATGCTCGTAGAAGCGTGAGCGATGCTGACATACTTAAGTATGAATGGTTTGCCTGGACACTACAGCAGTCCCGAGGCATCGGAATCCGCTCTGCCGAATCAGGAACCGGGTCTGACACATTAGCGGATTTAGCTCGCAGAGACCATGTAGATCTTCAATGTTTTATTGAGAAGCTCTTCTAG

Network for GWHGAAZE000913

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02359.19	CDC48_N	6	86	1.40E-21
PF02933.18	CDC48_2	107	169	7.30E-10
PF00004.30	AAA	221	350	7.60E-48
PF17862.2	AAA_lid_3	373	414	4.30E-14
PF00004.30	AAA	494	627	5.50E-48
PF17862.2	AAA_lid_3	649	690	2.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13525	VCP, CDC48	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.117
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.031
	SRR3591709	Stem	0.052
	SRR3591710	White floral bud	0.077
	SRR3591711	White flower	0.142
	SRR3591712	Green floral bud	0.023
	SRR3591713	Yellow flower	0.017
SRP173429	SRR8316895	Juvenile bud stage	0.039
	SRR8316896	Juvenile bud stage	0.066
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.003
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.003
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.002
	SRR8316907	Gold flowering stage	0.006
	SRR8316908	Gold flowering stage	0.004
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.128
	CNS0095593	Slightly white alabastrum(diploid) 2	0.006
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.002
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.056
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.016
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.046
	CNS0095612	Silvery flower (tetraploid) 3	0.017
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.009
CRA001975	CRR073297	Stem 1	0.009
	CRR073298	Stem 2	0.033
	CRR073299	Stem 3	0.035
	CRR073300	Leaf 1	0.014
	CRR073301	Leaf 2	0.022
	CRR073302	Leaf 3	0.005
	CRR073303	Juvenile bud 1	0.019
	CRR073304	Juvenile bud 2	0.006
	CRR073305	Juvenile bud 3	0.023
	CRR073306	Third green 1	0.019
	CRR073307	Third green 2	0.007
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.031
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.037
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.009
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.007
	CRR073316	Gold flowering 2	0.031
	CRR073317	Gold flowering 3	0.005
	CRR073318	Tawny withering 1	0.031
	CRR073319	Tawny withering 2	0.043
	CRR073320	Tawny withering 3	0.024