Gene detail

Detail information of GWHGAAZE000903

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002313512.1	thioredoxin family protein [Populus trichocarpa]
Swissprot	tr\|Q9FF55\|PDI14_ARATH	Protein disulfide isomerase-like 1-4 (Precursor)
trEMBL	tr\|B9HQ95\|B9HQ95_POPTR	Protein disulfide-isomerase {ECO:0000256\|RuleBase:RU361130}
TAIR10	AT5G60640.1	PDI-like 1-4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19184143	19190361	-
GWHAAZE00000001	mRNA	19184143	19190361	-
GWHAAZE00000001	exon	19189871	19190361	-
GWHAAZE00000001	exon	19188747	19188876	-
GWHAAZE00000001	exon	19187995	19188160	-
GWHAAZE00000001	exon	19187709	19187908	-
GWHAAZE00000001	exon	19186879	19186965	-
GWHAAZE00000001	exon	19186620	19186694	-
GWHAAZE00000001	exon	19186432	19186500	-
GWHAAZE00000001	exon	19186258	19186338	-
GWHAAZE00000001	exon	19186036	19186170	-
GWHAAZE00000001	exon	19184659	19184715	-
GWHAAZE00000001	exon	19184143	19184313	-
GWHAAZE00000001	CDS	19189871	19190361	-
GWHAAZE00000001	CDS	19188747	19188876	-
GWHAAZE00000001	CDS	19187995	19188160	-
GWHAAZE00000001	CDS	19187709	19187908	-
GWHAAZE00000001	CDS	19186879	19186965	-
GWHAAZE00000001	CDS	19186620	19186694	-
GWHAAZE00000001	CDS	19186432	19186500	-
GWHAAZE00000001	CDS	19186258	19186338	-
GWHAAZE00000001	CDS	19186036	19186170	-
GWHAAZE00000001	CDS	19184659	19184715	-
GWHAAZE00000001	CDS	19184143	19184313	-

Transcript Sequence
>GWHTAAZE000905 ACCACCACCAGCGATGACGACGAAGACCTTAGCTTCCTCGAAGAAGCCGACGACGCCGTCCCTCACCACACTCCACTCTCAGATCCACTCGAAGACGGCACCATTGAATCCGACGACGAAGACTTCGGCAGCTTCGACGACTTCGAAACGCCATCGGAATACGGCCACGAAGGCGACGACGAGGAGTACTCCAATCCACAGATCGACGAGAAGGATGTTGTCGTTTTGAAGGAGGGGAATTTTAGTGATTTTATTAAGAGTAATAGGTACGTGATGGTGGAGTTCTATGCTCCGTGGTGCGGTCATTGTCAGGCCCTTGCGCCGGAGTATGCGGAGGCCGCGACGGAGTTGAAAGACGAGTCGGTGGTGCTGGCGAAGGTGGATGCGACGGAGGAGAGTGAATTGGCGGAGGAGTATGAGGTGCAAGGGTTTCCTACTGTTTACTTCTTTGTTGATGGTGTTCATAAGCCTTACCCTGGCCAACGCAACAAAGATGCCATAGTTACGTGGATCAAGAAGAAGACAGGACCAGGGATATACAACATAACAACGACAGAGGATGCGGAGCGTATATTGACTTCTGAGAGTAAAGTTGTTTTGGGCTTCCTCGACTCCCTGGTGGGTCCTGAGAGTGAGGAGCTTGCTGCTGCTTCAAGACTTGAAGATGATGTAAACTTCTACCAAACTGTGGAATCAAATGTGGCTAAGCTTTTCCACATTGATCCTGATGTGAAACGCCCTGCTTTAGTCATGTTAAAAAAGGAGGCTGAGAAATTGAGCCATTACAATGGTCAATTCATCAAGTCTGCTATTGCCGAGTTTGTGTTCGCTAACAAGCTTCCTTTAGTGACTGTGTTTACTCGAGAATCTGCTTCTCTGATTTTTGAAAGCCCAATTAAAAAACAGCTATTGCTCTTTGCCACATCAAACGATTCAGAAAAGGTTCTCCCAATATTTGAAGAAGCTGCAAAGCTTTTTAAGGGGAAGCTTATATTTGTATACGTGGAAATGGACAATGAAGATGTTGGAAGGCCTGTTGCAGATTATTTTGGTGTCACCGGTGATGCTCCACAGGTTATTGGATACACGGGAAATGATGATGGTAAAAAGTACGTACTTGATGGTGAAGTGACCTTGGATAAACTTAAGGTTTTCGGGGATGATTTCCTAGAAGACAAACTTAAACCTTTCTACAAGTCAGATCCAGTTCCCAAAACAAATGACGGGGATGTGAAAATAGTGGTTGGGAATAATTTTGATGAAATCGTTCTGGACGAATCAAAAGACGTTCTTCTCGAGATATATGCACCATGGTGCGGCCATTGTCAAACACTTGAACCAACATACAACAAGCTTGCCAAACATTTACGTGGCATCGATTCTCTTGTTATAGCAAAAATGGATGGAACCACAAATGAACACCCCAGGGCAAAGTCTGATGGGTTCCCCACACTTCTCTTCTTCCCGGCAGGAAACAAAAGCTTTGATCCGATCACGGTAGATGTGGATCGAACAGTGGTGGCATTCTACAAATTCCTCAAGAAAAACGCTGCTGTACCGTTCAAGTTGCAGAAACCGGCTTCAACTCCAACATCAGATGGCTCTGATGCAAAAGAAAGCATCAAGAGCAGTATCGAAGATGCGAAGAAGGATGAGTTGTGA

Network for GWHGAAZE000903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	73	173	2.80E-30
PF13848.7	Thioredoxin_6	214	385	2.90E-24
PF00085.21	Thioredoxin	411	494	1.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09580	PDIA1, P4HB	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0016853	molecular_function	isomerase activity
GO:0003756	molecular_function	protein disulfide isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	122.231
	SRR3591706	second leaf	77.823
	SRR3591707	mature leaf	40.151
	SRR3591708	Shoot apex	75.187
	SRR3591709	Stem	60.232
	SRR3591710	White floral bud	56.677
	SRR3591711	White flower	55.489
	SRR3591712	Green floral bud	102.737
	SRR3591713	Yellow flower	29.269
SRP173429	SRR8316895	Juvenile bud stage	63.765
	SRR8316896	Juvenile bud stage	79.802
	SRR8316897	Juvenile bud stage	35.151
	SRR8316894	Third green stage	35.887
	SRR8316900	Third green stage	108.916
	SRR8316901	Third green stage	97.068
	SRR8316898	Complete white stage	22.953
	SRR8316899	Complete white stage	101.826
	SRR8316903	Complete white stage	36.623
	SRR8316902	Silver flowering stage	13.699
	SRR8316904	Silver flowering stage	18.033
	SRR8316905	Silver flowering stage	8.592
	SRR8316906	Gold flowering stage	28.196
	SRR8316907	Gold flowering stage	22.030
	SRR8316908	Gold flowering stage	26.703
SRP132670	SRR6706286	Control	110.432
	SRR6706287	Light intensity 50%	114.786
	SRR6706288	Light intensity 20%	118.875
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.401
	CNS0095593	Slightly white alabastrum(diploid) 2	68.619
	CNS0095594	Slightly white alabastrum(diploid) 3	57.736
	CNS0095595	Whole white alabastrum(diploid) 2	54.470
	CNS0095596	Whole white alabastrum(diploid) 3	46.787
	CNS0095597	Whole white alabastrum(diploid) 4	50.473
	CNS0095598	Silvery flower (diploied) 1	53.099
	CNS0095599	Silvery flower (diploied) 2	43.671
	CNS0095600	Silvery flower (diploied) 3	37.577
	CNS0095601	Golden flower (diploid) 1	37.211
	CNS0095602	Golden flower (diploid) 2	43.263
	CNS0095603	Golden flower (diploid) 3	40.204
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	138.795
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.890
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.177
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.199
	CNS0095610	Silvery flower (tetraploid) 1	39.457
	CNS0095611	Silvery flower (tetraploid) 2	36.318
	CNS0095612	Silvery flower (tetraploid) 3	20.282
	CNS0095613	Golden flower (tetraploid) 1	15.257
	CNS0095614	Golden flower (tetraploid) 2	35.195
	CNS0095615	Golden flower (tetraploid) 3	7.405
CRA001975	CRR073297	Stem 1	85.999
	CRR073298	Stem 2	84.575
	CRR073299	Stem 3	88.180
	CRR073300	Leaf 1	99.525
	CRR073301	Leaf 2	101.241
	CRR073302	Leaf 3	101.658
	CRR073303	Juvenile bud 1	117.180
	CRR073304	Juvenile bud 2	90.917
	CRR073305	Juvenile bud 3	120.757
	CRR073306	Third green 1	8.201
	CRR073307	Third green 2	8.809
	CRR073308	Third green 3	14.408
	CRR073309	Second white 1	10.247
	CRR073310	Second white 2	5.615
	CRR073311	Second white 3	4.208
	CRR073312	Silver flowering 1	4.296
	CRR073313	Silver flowering 2	7.144
	CRR073314	Silver flowering 3	4.567
	CRR073315	Gold flowering 1	32.248
	CRR073316	Gold flowering 2	51.830
	CRR073317	Gold flowering 3	40.102
	CRR073318	Tawny withering 1	79.217
	CRR073319	Tawny withering 2	69.433
	CRR073320	Tawny withering 3	89.372