Detail information of GWHGAAZE000902


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02014.11.42843E-97unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U1G5|A0A068U1G5_COFCA5E-98Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP02014.1}
TAIR10AT1G75230.23E-67DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1917944719180016-
GWHAAZE00000001mRNA1917944719180016-
GWHAAZE00000001exon1917944719180016-
GWHAAZE00000001CDS1917944719180016-
Transcript Sequence

Network for GWHGAAZE000902

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00730.26HhH-GPD611885.80E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01247alkA Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006284biological_processbase-excision repair
GO:0006281biological_processDNA repair
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.761
SRR3591706second leaf0.616
SRR3591707mature leaf1.471
SRR3591708Shoot apex1.291
SRR3591709Stem2.537
SRR3591710White floral bud3.159
SRR3591711White flower2.557
SRR3591712Green floral bud2.087
SRR3591713Yellow flower0.963
SRP173429 SRR8316895Juvenile bud stage 2.983
SRR8316896Juvenile bud stage 3.337
SRR8316897Juvenile bud stage 0.187
SRR8316894Third green stage 1.483
SRR8316900Third green stage 1.759
SRR8316901Third green stage 3.700
SRR8316898Complete white stage 1.148
SRR8316899Complete white stage 3.628
SRR8316903Complete white stage 2.462
SRR8316902Silver flowering stage0.994
SRR8316904Silver flowering stage1.399
SRR8316905Silver flowering stage0.923
SRR8316906Gold flowering stage 0.987
SRR8316907Gold flowering stage 0.655
SRR8316908Gold flowering stage 0.177
SRP132670SRR6706286Control0.547
SRR6706287Light intensity 50%0.420
SRR6706288Light intensity 20%0.609
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.487
CNS0095593Slightly white alabastrum(diploid) 20.593
CNS0095594Slightly white alabastrum(diploid) 31.131
CNS0095595Whole white alabastrum(diploid) 20.529
CNS0095596Whole white alabastrum(diploid) 30.073
CNS0095597Whole white alabastrum(diploid) 40.202
CNS0095598Silvery flower (diploied) 11.460
CNS0095599Silvery flower (diploied) 20.150
CNS0095600Silvery flower (diploied) 30.360
CNS0095601Golden flower (diploid) 11.970
CNS0095602Golden flower (diploid) 20.954
CNS0095603Golden flower (diploid) 31.127
CNS0095604Slightly white alabastrum(tetraploid) 10.626
CNS0095605Slightly white alabastrum(tetraploid) 20.716
CNS0095606Slightly white alabastrum(tetraploid) 30.173
CNS0095607Whole white alabastrum(tetraploid) 10.704
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.568
CNS0095611Silvery flower (tetraploid) 20.272
CNS0095612Silvery flower (tetraploid) 30.208
CNS0095613Golden flower (tetraploid) 10.069
CNS0095614Golden flower (tetraploid) 20.327
CNS0095615Golden flower (tetraploid) 30.096
CRA001975CRR073297Stem 12.532
CRR073298Stem 21.213
CRR073299Stem 33.111
CRR073300Leaf 12.358
CRR073301Leaf 21.054
CRR073302Leaf 31.595
CRR073303Juvenile bud 11.456
CRR073304Juvenile bud 21.031
CRR073305Juvenile bud 31.915
CRR073306Third green 10.772
CRR073307Third green 20.853
CRR073308Third green 30.642
CRR073309Second white 10.353
CRR073310Second white 21.598
CRR073311Second white 31.352
CRR073312Silver flowering 10.937
CRR073313Silver flowering 20.747
CRR073314Silver flowering 31.233
CRR073315Gold flowering 12.163
CRR073316Gold flowering 21.317
CRR073317Gold flowering 31.203
CRR073318Tawny withering 12.044
CRR073319Tawny withering 21.231
CRR073320Tawny withering 31.205