Gene detail

Detail information of GWHGAAZE000896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282279.1	0	PREDICTED: serine/threonine-protein kinase GRIK2 [Vitis vinifera]
Swissprot	tr\|Q5HZ38\|GRIK2_ARATH	0	Serine/threonine-protein kinase GRIK2
trEMBL	tr\|F6GTZ9\|F6GTZ9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43663.1}
TAIR10	AT5G60550.1	3E-157	geminivirus rep interacting kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	19045669	19059934	+
GWHAAZE00000001	mRNA	19045669	19059934	+
GWHAAZE00000001	exon	19045669	19045971	+
GWHAAZE00000001	exon	19047033	19047107	+
GWHAAZE00000001	exon	19047189	19047233	+
GWHAAZE00000001	exon	19048052	19048126	+
GWHAAZE00000001	exon	19048347	19048434	+
GWHAAZE00000001	exon	19048577	19048701	+
GWHAAZE00000001	exon	19048861	19048956	+
GWHAAZE00000001	exon	19049974	19050040	+
GWHAAZE00000001	exon	19050153	19050268	+
GWHAAZE00000001	exon	19056890	19056968	+
GWHAAZE00000001	exon	19059804	19059934	+
GWHAAZE00000001	CDS	19045669	19045971	+
GWHAAZE00000001	CDS	19047033	19047107	+
GWHAAZE00000001	CDS	19047189	19047233	+
GWHAAZE00000001	CDS	19048052	19048126	+
GWHAAZE00000001	CDS	19048347	19048434	+
GWHAAZE00000001	CDS	19048577	19048701	+
GWHAAZE00000001	CDS	19048861	19048956	+
GWHAAZE00000001	CDS	19049974	19050040	+
GWHAAZE00000001	CDS	19050153	19050268	+
GWHAAZE00000001	CDS	19056890	19056968	+
GWHAAZE00000001	CDS	19059804	19059934	+

Transcript Sequence
>GWHTAAZE000898 ATGGGTTGCGGCAGTTGTTTTGGGTTCTCGTTAGCAAGAAAACCCAAGCCCGAGATATTAAGGACCAATATTTCCTCAGGGAATCATACTTCACAGGGGTTGTTGTGGAGTGAAGATCCGGAGGATGATGTTGATGATAATTGTTCCTATAATGGCGATGTCACTGATACTGGAAGTTGTGATGAAGGTGAGTTGCAAAGCCCTGCAAAACGGTCTGAAGAGATTATCATGTACCGAACTCGGAATGGATGGATTTGCAGAGAATTTCCCGTCAGGGAAACCCATAGAGTTGTTCGCTCTGAGGATGACAATGGGAACAAGATGGTTAACGAATATGTACGTGAGTGTAAAATTGGCTCTGGTAGCTATGGAAAAGTGGTTCTTTACCGAAGCCGTGTTGATGGGAATCATTATGCAATCAAGGCATTTCATAAGTCTCATTTATTAAAGCTACGAGTTGCCCCATCAGAGACTGCTATGACTGATGTTCTTCGTGAGGTTTTAATCATGAAAATGTTGGAACATCCTAATATAGTAAATCTTATTGAGGTGATTGATGATCCAACCACAGATTACTTCTTTATGGTTCTTGAATATGTAGAAGGCAAGTGGGTTTGTGAGGGTTCTGGTCCGCCAGGTGGTCTAGGAGAAAACACTGCACGAAAGTACTTGCGAGATATAGTTTCTGGGTTGATGTATCTCCATGCTCATAATATTGTGCATGGGGATATTAAACCTGAGAATCTTTTGGTTACCGGTTCTGGCACGGTGAAGATCGCTGATTTCAGCGTCAGCCAGGTTTTTGAGGATGATAATGATGAGCTCTGGCGTTCCCCTGGGACTCCTGTTTTCACCGCTCCTGAGTGCTGCTTAGGTCTAACTTATCATGGTAAAACTGCTGATACTTGGGCAGTTGGAGTTACTTTATACTGCATGGTGCTGGGTGAATACCCTTTTCTCGGAGACACACTGCAGGATACTTATGAGAAGATTGTGAATAACCCATTGTATATCCCTGATGGTATGAACCCCTTGCTGAAGAACTTAATAGAGGGACTTCTCTGCAAAGACCCAAACGAAAGGCTGACCCTGGAGAGAGTAGCAGAACATGCCTGGGTAGTTGGAGAAGATGGGCCTCTCTCTCAGTACTCGTGCTGGTGCAAGCGTGACAGATCAGTAAGGGAAGAATCTCACTTTTAA

Network for GWHGAAZE000896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	112	373	1.60E-56

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-LKB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.347
	SRR3591706	second leaf	6.421
	SRR3591707	mature leaf	8.715
	SRR3591708	Shoot apex	10.310
	SRR3591709	Stem	7.417
	SRR3591710	White floral bud	34.095
	SRR3591711	White flower	21.072
	SRR3591712	Green floral bud	30.012
	SRR3591713	Yellow flower	24.226
SRP173429	SRR8316895	Juvenile bud stage	15.250
	SRR8316896	Juvenile bud stage	31.908
	SRR8316897	Juvenile bud stage	12.559
	SRR8316894	Third green stage	12.396
	SRR8316900	Third green stage	22.503
	SRR8316901	Third green stage	21.250
	SRR8316898	Complete white stage	6.095
	SRR8316899	Complete white stage	22.374
	SRR8316903	Complete white stage	9.929
	SRR8316902	Silver flowering stage	5.865
	SRR8316904	Silver flowering stage	9.730
	SRR8316905	Silver flowering stage	4.554
	SRR8316906	Gold flowering stage	17.876
	SRR8316907	Gold flowering stage	15.866
	SRR8316908	Gold flowering stage	16.188
SRP132670	SRR6706286	Control	11.980
	SRR6706287	Light intensity 50%	13.911
	SRR6706288	Light intensity 20%	13.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.620
	CNS0095593	Slightly white alabastrum(diploid) 2	16.822
	CNS0095594	Slightly white alabastrum(diploid) 3	27.134
	CNS0095595	Whole white alabastrum(diploid) 2	22.456
	CNS0095596	Whole white alabastrum(diploid) 3	20.913
	CNS0095597	Whole white alabastrum(diploid) 4	29.987
	CNS0095598	Silvery flower (diploied) 1	13.748
	CNS0095599	Silvery flower (diploied) 2	13.238
	CNS0095600	Silvery flower (diploied) 3	14.460
	CNS0095601	Golden flower (diploid) 1	14.923
	CNS0095602	Golden flower (diploid) 2	15.100
	CNS0095603	Golden flower (diploid) 3	13.826
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.835
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.495
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.663
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.262
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.758
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.230
	CNS0095610	Silvery flower (tetraploid) 1	17.406
	CNS0095611	Silvery flower (tetraploid) 2	18.665
	CNS0095612	Silvery flower (tetraploid) 3	20.256
	CNS0095613	Golden flower (tetraploid) 1	14.093
	CNS0095614	Golden flower (tetraploid) 2	18.793
	CNS0095615	Golden flower (tetraploid) 3	15.943
CRA001975	CRR073297	Stem 1	26.148
	CRR073298	Stem 2	34.935
	CRR073299	Stem 3	17.170
	CRR073300	Leaf 1	22.829
	CRR073301	Leaf 2	19.840
	CRR073302	Leaf 3	8.667
	CRR073303	Juvenile bud 1	17.877
	CRR073304	Juvenile bud 2	7.819
	CRR073305	Juvenile bud 3	8.812
	CRR073306	Third green 1	4.390
	CRR073307	Third green 2	3.786
	CRR073308	Third green 3	4.246
	CRR073309	Second white 1	5.238
	CRR073310	Second white 2	5.657
	CRR073311	Second white 3	5.193
	CRR073312	Silver flowering 1	6.801
	CRR073313	Silver flowering 2	3.331
	CRR073314	Silver flowering 3	8.995
	CRR073315	Gold flowering 1	6.683
	CRR073316	Gold flowering 2	9.087
	CRR073317	Gold flowering 3	4.117
	CRR073318	Tawny withering 1	9.974
	CRR073319	Tawny withering 2	12.611
	CRR073320	Tawny withering 3	5.851