Detail information of GWHGAAZE000882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285019.20PREDICTED: auxin response factor 4 [Vitis vinifera]
Swissprottr|Q9ZTX9|ARFD_ARATH0Auxin response factor 4
trEMBLtr|D7SKV9|D7SKV9_VITVI0Auxin response factor {ECO:0000256|RuleBase:RU004561}
TAIR10AT5G60450.10auxin response factor 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1876819718775798-
GWHAAZE00000001mRNA1876819718775798-
GWHAAZE00000001exon1877546918775798-
GWHAAZE00000001exon1877484918774911-
GWHAAZE00000001exon1877309818773265-
GWHAAZE00000001exon1877270118772785-
GWHAAZE00000001exon1877250118772591-
GWHAAZE00000001exon1877219918772363-
GWHAAZE00000001exon1877102118771140-
GWHAAZE00000001exon1877086818770943-
GWHAAZE00000001exon1877030118770466-
GWHAAZE00000001exon1876942318770063-
GWHAAZE00000001exon1876898818769178-
GWHAAZE00000001exon1876819718768398-
GWHAAZE00000001CDS1877546918775798-
GWHAAZE00000001CDS1877484918774911-
GWHAAZE00000001CDS1877309818773265-
GWHAAZE00000001CDS1877270118772785-
GWHAAZE00000001CDS1877250118772591-
GWHAAZE00000001CDS1877219918772363-
GWHAAZE00000001CDS1877102118771140-
GWHAAZE00000001CDS1877086818770943-
GWHAAZE00000001CDS1877030118770466-
GWHAAZE00000001CDS1876942318770063-
GWHAAZE00000001CDS1876898818769178-
GWHAAZE00000001CDS1876819718768398-
Transcript Sequence

Network for GWHGAAZE000882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B31582591.80E-21
PF06507.14Auxin_resp2843655.60E-31
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3-ARF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0009725biological_processresponse to hormone
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.800
SRR3591706second leaf6.932
SRR3591707mature leaf0.686
SRR3591708Shoot apex23.446
SRR3591709Stem5.057
SRR3591710White floral bud0.496
SRR3591711White flower0.926
SRR3591712Green floral bud2.062
SRR3591713Yellow flower0.621
SRP173429 SRR8316895Juvenile bud stage 1.647
SRR8316896Juvenile bud stage 1.680
SRR8316897Juvenile bud stage 1.349
SRR8316894Third green stage 0.866
SRR8316900Third green stage 1.397
SRR8316901Third green stage 1.440
SRR8316898Complete white stage 0.080
SRR8316899Complete white stage 0.907
SRR8316903Complete white stage 0.177
SRR8316902Silver flowering stage0.390
SRR8316904Silver flowering stage0.364
SRR8316905Silver flowering stage0.067
SRR8316906Gold flowering stage 0.297
SRR8316907Gold flowering stage 0.353
SRR8316908Gold flowering stage 0.509
SRP132670SRR6706286Control0.650
SRR6706287Light intensity 50%0.864
SRR6706288Light intensity 20%0.959
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.946
CNS0095593Slightly white alabastrum(diploid) 21.872
CNS0095594Slightly white alabastrum(diploid) 31.964
CNS0095595Whole white alabastrum(diploid) 20.814
CNS0095596Whole white alabastrum(diploid) 30.506
CNS0095597Whole white alabastrum(diploid) 40.284
CNS0095598Silvery flower (diploied) 10.952
CNS0095599Silvery flower (diploied) 21.031
CNS0095600Silvery flower (diploied) 30.507
CNS0095601Golden flower (diploid) 10.324
CNS0095602Golden flower (diploid) 20.301
CNS0095603Golden flower (diploid) 30.325
CNS0095604Slightly white alabastrum(tetraploid) 12.292
CNS0095605Slightly white alabastrum(tetraploid) 21.564
CNS0095606Slightly white alabastrum(tetraploid) 36.774
CNS0095607Whole white alabastrum(tetraploid) 11.051
CNS0095608Whole white alabastrum(tetraploid) 20.588
CNS0095609Whole white alabastrum(tetraploid) 30.866
CNS0095610Silvery flower (tetraploid) 10.847
CNS0095611Silvery flower (tetraploid) 20.264
CNS0095612Silvery flower (tetraploid) 30.556
CNS0095613Golden flower (tetraploid) 10.685
CNS0095614Golden flower (tetraploid) 20.479
CNS0095615Golden flower (tetraploid) 30.452
CRA001975CRR073297Stem 11.902
CRR073298Stem 21.658
CRR073299Stem 31.097
CRR073300Leaf 11.655
CRR073301Leaf 20.895
CRR073302Leaf 31.878
CRR073303Juvenile bud 10.589
CRR073304Juvenile bud 20.289
CRR073305Juvenile bud 30.736
CRR073306Third green 10.033
CRR073307Third green 20.094
CRR073308Third green 30.067
CRR073309Second white 10.133
CRR073310Second white 20.025
CRR073311Second white 30.033
CRR073312Silver flowering 10.158
CRR073313Silver flowering 20.172
CRR073314Silver flowering 30.132
CRR073315Gold flowering 10.463
CRR073316Gold flowering 20.387
CRR073317Gold flowering 30.211
CRR073318Tawny withering 10.855
CRR073319Tawny withering 20.486
CRR073320Tawny withering 30.828