Detail information of GWHGAAZE000877


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIX10769.10elongation factor 1 alpha [Panax notoginseng]
Swissprottr|Q8GTY0|EF1A4_ARATH0Elongation factor 1-alpha 4
trEMBLtr|R0I523|R0I523_9BRAS0Elongation factor 1-alpha {ECO:0000256|RuleBase:RU004060}
TAIR10AT5G60390.30GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1859379418595241-
GWHAAZE00000001mRNA1859379418595241-
GWHAAZE00000001exon1859379418594681-
GWHAAZE00000001exon1859478018595241-
GWHAAZE00000001CDS1859478018595241-
GWHAAZE00000001CDS1859379418594681-
Transcript Sequence

Network for GWHGAAZE000877

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0129GO:0006415 translational termination GOslim:biological_process
GO:0006414 translational elongation GOslim:biological_process
GO:0005737 cytoplasm GOslim:cellular_component
GO:0003747 translation release factor activity GOslim:molecular_function
GO:0003746 translation elongation factor activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU72211.60E-52
PF03144.26GTP_EFTU_D22483136.70E-14
PF03143.18GTP_EFTU_D33224293.80E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03231EEF1A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006414biological_processtranslational elongation
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE000877.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100020003000250500750125015001750225025002750Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1666.599
SRR3591706second leaf880.766
SRR3591707mature leaf557.420
SRR3591708Shoot apex1568.935
SRR3591709Stem948.059
SRR3591710White floral bud1290.657
SRR3591711White flower1928.591
SRR3591712Green floral bud1488.940
SRR3591713Yellow flower1553.987
SRP173429 SRR8316895Juvenile bud stage 621.532
SRR8316896Juvenile bud stage 725.388
SRR8316897Juvenile bud stage 411.301
SRR8316894Third green stage 354.474
SRR8316900Third green stage 1469.978
SRR8316901Third green stage 1202.672
SRR8316898Complete white stage 476.734
SRR8316899Complete white stage 1480.276
SRR8316903Complete white stage 658.439
SRR8316902Silver flowering stage530.091
SRR8316904Silver flowering stage632.168
SRR8316905Silver flowering stage295.481
SRR8316906Gold flowering stage 912.425
SRR8316907Gold flowering stage 913.345
SRR8316908Gold flowering stage 1108.345
SRP132670SRR6706286Control1793.100
SRR6706287Light intensity 50%1858.088
SRR6706288Light intensity 20%1994.935
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1673.453
CNS0095593Slightly white alabastrum(diploid) 2838.885
CNS0095594Slightly white alabastrum(diploid) 3518.089
CNS0095595Whole white alabastrum(diploid) 2640.428
CNS0095596Whole white alabastrum(diploid) 3672.090
CNS0095597Whole white alabastrum(diploid) 4494.810
CNS0095598Silvery flower (diploied) 1689.298
CNS0095599Silvery flower (diploied) 2717.369
CNS0095600Silvery flower (diploied) 31235.807
CNS0095601Golden flower (diploid) 1523.734
CNS0095602Golden flower (diploid) 21086.124
CNS0095603Golden flower (diploid) 31040.949
CNS0095604Slightly white alabastrum(tetraploid) 1818.892
CNS0095605Slightly white alabastrum(tetraploid) 2714.076
CNS0095606Slightly white alabastrum(tetraploid) 31568.628
CNS0095607Whole white alabastrum(tetraploid) 1369.894
CNS0095608Whole white alabastrum(tetraploid) 2345.745
CNS0095609Whole white alabastrum(tetraploid) 31169.039
CNS0095610Silvery flower (tetraploid) 11161.756
CNS0095611Silvery flower (tetraploid) 2981.010
CNS0095612Silvery flower (tetraploid) 3868.220
CNS0095613Golden flower (tetraploid) 1662.832
CNS0095614Golden flower (tetraploid) 21019.051
CNS0095615Golden flower (tetraploid) 3780.648
CRA001975CRR073297Stem 11658.118
CRR073298Stem 21708.321
CRR073299Stem 32349.097
CRR073300Leaf 12069.411
CRR073301Leaf 22204.884
CRR073302Leaf 32802.972
CRR073303Juvenile bud 12590.027
CRR073304Juvenile bud 22396.977
CRR073305Juvenile bud 32695.798
CRR073306Third green 11532.454
CRR073307Third green 21359.078
CRR073308Third green 31483.801
CRR073309Second white 12174.096
CRR073310Second white 21146.374
CRR073311Second white 31015.852
CRR073312Silver flowering 11615.451
CRR073313Silver flowering 22298.819
CRR073314Silver flowering 31641.433
CRR073315Gold flowering 1975.394
CRR073316Gold flowering 21174.506
CRR073317Gold flowering 31333.779
CRR073318Tawny withering 11957.231
CRR073319Tawny withering 21395.853
CRR073320Tawny withering 31989.754