Gene detail

Detail information of GWHGAAZE000856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284749.2	7.7072E-172	PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	5E-100	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|F6GTW6\|F6GTW6_VITVI	3E-172	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43630.1}
TAIR10	AT2G28550.3	1E-91	related to AP2.7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	18106311	18109777	+
GWHAAZE00000001	mRNA	18106311	18109777	+
GWHAAZE00000001	exon	18106311	18106825	+
GWHAAZE00000001	exon	18107084	18107109	+
GWHAAZE00000001	exon	18107214	18107244	+
GWHAAZE00000001	exon	18107334	18107421	+
GWHAAZE00000001	exon	18107553	18107734	+
GWHAAZE00000001	exon	18107970	18108014	+
GWHAAZE00000001	exon	18108138	18108241	+
GWHAAZE00000001	exon	18108337	18108422	+
GWHAAZE00000001	exon	18109113	18109226	+
GWHAAZE00000001	exon	18109529	18109777	+
GWHAAZE00000001	CDS	18106311	18106825	+
GWHAAZE00000001	CDS	18107084	18107109	+
GWHAAZE00000001	CDS	18107214	18107244	+
GWHAAZE00000001	CDS	18107334	18107421	+
GWHAAZE00000001	CDS	18107553	18107734	+
GWHAAZE00000001	CDS	18107970	18108014	+
GWHAAZE00000001	CDS	18108138	18108241	+
GWHAAZE00000001	CDS	18108337	18108422	+
GWHAAZE00000001	CDS	18109113	18109226	+
GWHAAZE00000001	CDS	18109529	18109777	+

Transcript Sequence
>GWHTAAZE000858 ATGTTGGATCTTAATCTAAGTGTTGGCTGCGACGAAACAACGATGATGATGAACGGAGAAAAGTTTCCAGAAGGTTTCGGACGTGCTCAAATGGACGAATCAGGAACTTCGAATTCGTCCATCGTCAATGCAGAAGCTTCCAGCAATGCTGGAGACGACGACTCGTGCTCGGCACGTGCCCTTTCCGGCGAGTCCTTTGCTCTCAATTTCGGCATAAACGTTGATGATCAAGTGAATCGGTCCGAGTTGGTGACTCGGCAGTTGTTTCCGGTGAGTGGAGGAGGAGGCGGTGGGTCAACTCAGGGACAGAGATCGGTGACTTTGGCCGCAAATTTGGCTGATCTGACTTTCGGCCAAGCCGGTTTCGATGGGATAGGAGGTATGAGAGTTGTACAACAGCATCCACCGCAGCCACAGCAGGTGAAGAAAAGTAGGCGGGGACCGAGGTCTCGTAGTTCACAGTATAGAGGAGTTACCTTCTATAGAAGAACTGGTAGATGGGAATCGCATATCTGGGACACTGGAAAACAAGTCTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTTCGGGGTGTCGATGCTGACATTAATTTTAATCTCAGTGATTATGAGGAGGATATGAAGCAGGTTCTTTTTTCTTTTCTTTTCTCCCCACAGTTGCAAATGAAGAACCTTACCAAAGAAGAATTTGTGCAAATACTTCGTCGCCAGAGTACTGGTTTTTCGAGGGGAAGCTCAAAATACAGAGGGGTGACACTGCACAAATGTGGTAGATGGGAAGCTCGAATGGGACAGTTCCTCGGGAAAAAGTATATATATCTTGGGCTATTCAACAGTGAAGTAGAAGCTGCAAGGGCTTACGACAAGGCAGCTATCAAATGTAATGGAAGGGAGGCTGTCACCAACTTTGAGGCAAGTACATATGAAGGGGAAATGGCATTTGAGACCCATAATGGAGGCAGCAACCACAATCTTGACCTGAACTTGGCCATTTCTACCTCTTTTGGAGATGGTCCAGTGGCAAATGACGCTAGAAGATTTAAGATGGAGCACACAGCAGCAACAGCCGGTAATTCACCTCTTAAGGGGCTAGCAACAACACCAGAGCACTCTCTTTTATGGACTAGTGCACATTCTAATTTCTTTCCCAACTTTGAGGGGAGAGAAACAGAGAAAAGAAGAGAAGTAGGTTCATCTCAAGGAGCCCCAAATTGGGGTTTCCCATTGCAAATGCAGAGGCATGGTCAACTCAACACGGTGCCAATGACATTGTTCGCTTCAGCAGCATCATCAGGATTCTCATCTTCCCCACCAACAACTAATCTCTTTTCTTCATCTGCAGCCAACGACGCGTCTCGATACTACTACCCGGTGAAGCTGCAGCTTGCTTCTCCTCCGCCCACATAA

Network for GWHGAAZE000856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	154	202	1.30E-10
PF00847.21	AP2	257	306	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.262
	SRR3591706	second leaf	19.697
	SRR3591707	mature leaf	25.393
	SRR3591708	Shoot apex	18.031
	SRR3591709	Stem	31.582
	SRR3591710	White floral bud	13.855
	SRR3591711	White flower	4.125
	SRR3591712	Green floral bud	8.212
	SRR3591713	Yellow flower	2.239
SRP173429	SRR8316895	Juvenile bud stage	2.477
	SRR8316896	Juvenile bud stage	4.546
	SRR8316897	Juvenile bud stage	2.042
	SRR8316894	Third green stage	2.424
	SRR8316900	Third green stage	6.273
	SRR8316901	Third green stage	5.751
	SRR8316898	Complete white stage	12.097
	SRR8316899	Complete white stage	8.758
	SRR8316903	Complete white stage	20.353
	SRR8316902	Silver flowering stage	7.021
	SRR8316904	Silver flowering stage	8.720
	SRR8316905	Silver flowering stage	4.738
	SRR8316906	Gold flowering stage	15.832
	SRR8316907	Gold flowering stage	14.925
	SRR8316908	Gold flowering stage	12.309
SRP132670	SRR6706286	Control	12.155
	SRR6706287	Light intensity 50%	13.235
	SRR6706288	Light intensity 20%	11.070
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.134
	CNS0095593	Slightly white alabastrum(diploid) 2	4.138
	CNS0095594	Slightly white alabastrum(diploid) 3	3.579
	CNS0095595	Whole white alabastrum(diploid) 2	3.590
	CNS0095596	Whole white alabastrum(diploid) 3	2.901
	CNS0095597	Whole white alabastrum(diploid) 4	4.234
	CNS0095598	Silvery flower (diploied) 1	4.210
	CNS0095599	Silvery flower (diploied) 2	3.684
	CNS0095600	Silvery flower (diploied) 3	11.649
	CNS0095601	Golden flower (diploid) 1	2.310
	CNS0095602	Golden flower (diploid) 2	4.749
	CNS0095603	Golden flower (diploid) 3	3.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.297
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.859
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.721
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.786
	CNS0095610	Silvery flower (tetraploid) 1	20.935
	CNS0095611	Silvery flower (tetraploid) 2	13.569
	CNS0095612	Silvery flower (tetraploid) 3	23.028
	CNS0095613	Golden flower (tetraploid) 1	20.856
	CNS0095614	Golden flower (tetraploid) 2	24.834
	CNS0095615	Golden flower (tetraploid) 3	17.782
CRA001975	CRR073297	Stem 1	3.261
	CRR073298	Stem 2	4.020
	CRR073299	Stem 3	3.436
	CRR073300	Leaf 1	7.276
	CRR073301	Leaf 2	9.846
	CRR073302	Leaf 3	3.989
	CRR073303	Juvenile bud 1	4.026
	CRR073304	Juvenile bud 2	4.872
	CRR073305	Juvenile bud 3	5.440
	CRR073306	Third green 1	32.370
	CRR073307	Third green 2	21.177
	CRR073308	Third green 3	24.004
	CRR073309	Second white 1	4.771
	CRR073310	Second white 2	9.000
	CRR073311	Second white 3	10.131
	CRR073312	Silver flowering 1	6.904
	CRR073313	Silver flowering 2	6.519
	CRR073314	Silver flowering 3	5.572
	CRR073315	Gold flowering 1	2.164
	CRR073316	Gold flowering 2	4.366
	CRR073317	Gold flowering 3	0.594
	CRR073318	Tawny withering 1	10.902
	CRR073319	Tawny withering 2	6.675
	CRR073320	Tawny withering 3	9.906