Detail information of GWHGAAZE000852


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO73043.10hypothetical protein CISIN_1g001847mg [Citrus sinensis]
Swissprottr|O48963|PHOT1_ARATH0Phototropin-1
trEMBLtr|A0A067G0B0|A0A067G0B0_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO73043.1}
TAIR10AT3G45780.20phototropin 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1797109317978172-
GWHAAZE00000001mRNA1797109317978172-
GWHAAZE00000001exon1797109317971194-
GWHAAZE00000001exon1797165017971790-
GWHAAZE00000001exon1797208117972193-
GWHAAZE00000001exon1797256217972613-
GWHAAZE00000001exon1797306317973185-
GWHAAZE00000001exon1797329117973397-
GWHAAZE00000001exon1797350417973553-
GWHAAZE00000001exon1797374517973848-
GWHAAZE00000001exon1797424117974321-
GWHAAZE00000001exon1797443817974522-
GWHAAZE00000001exon1797463317974709-
GWHAAZE00000001exon1797486717974956-
GWHAAZE00000001exon1797505517975114-
GWHAAZE00000001exon1797560217975706-
GWHAAZE00000001exon1797580517975854-
GWHAAZE00000001exon1797630517976450-
GWHAAZE00000001exon1797697917977049-
GWHAAZE00000001exon1797734917977592-
GWHAAZE00000001exon1797793117978172-
GWHAAZE00000001CDS1797793117978172-
GWHAAZE00000001CDS1797734917977592-
GWHAAZE00000001CDS1797697917977049-
GWHAAZE00000001CDS1797630517976450-
GWHAAZE00000001CDS1797580517975854-
GWHAAZE00000001CDS1797560217975706-
GWHAAZE00000001CDS1797505517975114-
GWHAAZE00000001CDS1797486717974956-
GWHAAZE00000001CDS1797463317974709-
GWHAAZE00000001CDS1797443817974522-
GWHAAZE00000001CDS1797424117974321-
GWHAAZE00000001CDS1797374517973848-
GWHAAZE00000001CDS1797350417973553-
GWHAAZE00000001CDS1797329117973397-
GWHAAZE00000001CDS1797306317973185-
GWHAAZE00000001CDS1797256217972613-
GWHAAZE00000001CDS1797208117972193-
GWHAAZE00000001CDS1797165017971790-
GWHAAZE00000001CDS1797109317971194-
Transcript Sequence

Network for GWHGAAZE000852

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13426.8PAS_91582625.00E-17
PF00069.26Pkinase3506353.80E-64
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyAGC_RSK-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf130.556
SRR3591706second leaf90.119
SRR3591707mature leaf135.365
SRR3591708Shoot apex55.417
SRR3591709Stem54.299
SRR3591710White floral bud148.225
SRR3591711White flower114.001
SRR3591712Green floral bud117.869
SRR3591713Yellow flower72.770
SRP173429 SRR8316895Juvenile bud stage 53.977
SRR8316896Juvenile bud stage 70.399
SRR8316897Juvenile bud stage 40.704
SRR8316894Third green stage 37.172
SRR8316900Third green stage 99.117
SRR8316901Third green stage 85.802
SRR8316898Complete white stage 57.793
SRR8316899Complete white stage 149.688
SRR8316903Complete white stage 116.760
SRR8316902Silver flowering stage42.538
SRR8316904Silver flowering stage91.409
SRR8316905Silver flowering stage39.203
SRR8316906Gold flowering stage 83.652
SRR8316907Gold flowering stage 62.723
SRR8316908Gold flowering stage 75.280
SRP132670SRR6706286Control80.415
SRR6706287Light intensity 50%80.470
SRR6706288Light intensity 20%82.506
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.132
CNS0095593Slightly white alabastrum(diploid) 263.529
CNS0095594Slightly white alabastrum(diploid) 353.993
CNS0095595Whole white alabastrum(diploid) 269.452
CNS0095596Whole white alabastrum(diploid) 356.384
CNS0095597Whole white alabastrum(diploid) 459.249
CNS0095598Silvery flower (diploied) 1146.394
CNS0095599Silvery flower (diploied) 2122.842
CNS0095600Silvery flower (diploied) 3133.726
CNS0095601Golden flower (diploid) 1104.158
CNS0095602Golden flower (diploid) 2120.023
CNS0095603Golden flower (diploid) 3116.606
CNS0095604Slightly white alabastrum(tetraploid) 177.441
CNS0095605Slightly white alabastrum(tetraploid) 258.837
CNS0095606Slightly white alabastrum(tetraploid) 3172.217
CNS0095607Whole white alabastrum(tetraploid) 147.567
CNS0095608Whole white alabastrum(tetraploid) 245.921
CNS0095609Whole white alabastrum(tetraploid) 3128.289
CNS0095610Silvery flower (tetraploid) 1152.552
CNS0095611Silvery flower (tetraploid) 2146.658
CNS0095612Silvery flower (tetraploid) 3192.547
CNS0095613Golden flower (tetraploid) 169.518
CNS0095614Golden flower (tetraploid) 2134.867
CNS0095615Golden flower (tetraploid) 375.542
CRA001975CRR073297Stem 185.739
CRR073298Stem 276.518
CRR073299Stem 354.231
CRR073300Leaf 193.991
CRR073301Leaf 285.266
CRR073302Leaf 362.835
CRR073303Juvenile bud 161.470
CRR073304Juvenile bud 237.696
CRR073305Juvenile bud 3113.503
CRR073306Third green 126.061
CRR073307Third green 222.623
CRR073308Third green 328.851
CRR073309Second white 126.933
CRR073310Second white 236.397
CRR073311Second white 331.878
CRR073312Silver flowering 117.556
CRR073313Silver flowering 218.244
CRR073314Silver flowering 311.879
CRR073315Gold flowering 116.093
CRR073316Gold flowering 231.952
CRR073317Gold flowering 328.088
CRR073318Tawny withering 133.254
CRR073319Tawny withering 229.483
CRR073320Tawny withering 329.275