Gene detail

Detail information of GWHGAAZE000838

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO73010.1	0	hypothetical protein CISIN_1g003341mg [Citrus sinensis]
Swissprot	tr\|Q9FN92\|Y5597_ARATH	0	Probable receptor-like protein kinase At5g59700 (Precursor)
trEMBL	tr\|A0A067GBX3\|A0A067GBX3_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO73012.1}
TAIR10	AT5G59700.1	6E-165	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	17710082	17712577	+
GWHAAZE00000001	mRNA	17710082	17712577	+
GWHAAZE00000001	exon	17710082	17711742	+
GWHAAZE00000001	exon	17712085	17712577	+
GWHAAZE00000001	CDS	17710082	17711742	+
GWHAAZE00000001	CDS	17712085	17712577	+

Transcript Sequence
>GWHTAAZE000840 ATGATAATGGATTGTTGGGTTTTCAATTTTCTCATTTGGGTTTCATCAGTATTGTATTTGTTATGCTTCTGTTGTGGATTTGATCCATCCGATAATTACTTGATAGACTGTGGATCACCAAGAAACACCACAGTTGGTACTAGGGTTTTTGTGGCTGATAACTTGGCTTCAAGATTCCTTTCAACCCCAAACAACATTTTGGTCAACACCTCTTCGAATTCAATCAATTCATCACTTGGTTTTTACCAAACAGCTAGAATTTTCCAAGGGAACTCTAGGTACACATTTTCCATCACCCGACCCGGCCGCATCTGGATTCGCCTCTATTTTTACCCATTTGCTGATAGGAATTACAATATGAGCTCTGCCAGCTTCTCTGTTTCCACCCAAAATCACCAACTTCTTAGCAATTTCAGCCCAAAGGATGGTGGTTCAATGAAAGAATTTTCAGTCAATGTGGCATCTAGTACCCTTGTAATCACCTTCACCCCTTCTGTAAATTCGTTCGCATTCATAAACGCGTTAGAAATCGTGTCAGTCCCCGATTCCATCATCACCGATGATGCTGCATCCATCACTCCTCCGGGGAAATTTCAAGGTCTGCAAATTCAGGCATTACAAACAATTGCCAGGGTAAATATGGGCGGACCTACTGTCTCATTTGATAATGATACGCTATGGCGAACGTGGGTACCTGATCAAAGATTCTTAGTGGATCCCAATTTGGCCGCATTCAAAACGAATATTGGAGCAGTTAGGTATCCTGAGGACGGTGCGACTGAAGATACTGCACCGGCTAGCGTTTACGGTACTGTCACCAAGATGCGCTCTGATAATGATCCCTCTGCCAATTTCAATGTTACATGGGAGTTCACTGTCGATCCAGGGTTTCAATATTTTATTCGGTTTCACTTTTGTGATATAGTGAGTGATTCCCTTAACCAGCTCTACTTCAATGTTTATGTCGATTCCTGGAATGTTTTGCCAAATTTTGATTTGACGTCCAAGGGCGTCAACGCCTTGGCAGTCGCATATTATACGGATTTTGTTACAGCAATGACAGATAGTAGTAAGATTCGTATTAGTGTTGGTCCGTCTACTCTAAGTAGTTACCCGGATGCGATTCTAAATGGATTAGAAATTATGAAAATGAATAATTCCATGGGGAGCCTTAGTGAAATGAGCGCTGTGGGGTCCACCTCGAATACAGGCTTGAAGAAGAATGTTGGAGTGGTTGTGGGTGTGTGTGTAGGCGTATCAGTTGCTTTGATTCTGGCCGGTGTTCTATTTTTCTTGCATAGAAGAAGAAAAGTCCAACGCCTCGGCCAATCAAAATTGTGGGTTCCCGTTTCTTTATCTATTGGGGGAACCTCCCACACGATGGGGAGTAAGTACTCTAATGGTACAGTTACCAGTGTTGGCTCTAACATTAGCTATCGGTGTCCTTTTGCGGCGGTTCAAGAAGCAACAAACAACTTCGATGAGAGTTGGGTTATTGGGATTGGTGGTTTTGGGAAAGTTTACAAAGGAGCTTTTAGCGACGGTACGAAAGTGGCAGTAAAGAGGGGTAATCCCCAGTCCCAACAAGGTCTAGCTGAGTTCCAAACGGAAATCGAGATGCTCTCTCAGTTCCGCCACCGCCATTTGGTTTCTTTGATCGGACAACAGTTGACTGAGAAATCAGACGTGTACTCATTTGGGGTTGTCTTGTTTGAAGTTCTTTGCGCTAGGCCGGTGATAGATCCATCTCTTCCTCGGGAAATGGTCAACTTAGCCGAATGGGCAATGAAGTGGCAAAAGAAAGGGCAAATTGAGCAAATTGTAGACCCAAATCTTTCAGGGAAAATAAGACCAGATTCACTTCGGAAATTCGCAGAAACTGCCGAGAAATGCTTGGCAGACTATGGGGTTGACCGACCTTCAATGGGAGATGTACTGTGGAATCTTGAATATGCTCTTCAACTTCAAGAAGCTGTTCTTGAAAATGACCCAGAAGAAAACAGTACAAATCTCATTGAGTTCTCTCCGCCAACGAACGATTTTAGTCGCGCAGATGCTTCAGTTTCTCAGGTGGAAATGACAAATGTGGATGATCTTTCGGGGGTTTCTATGAGTCGGGTTTTCTCTCAGCTGGTGAAATCCGAGGGTCGATGA

Network for GWHGAAZE000838

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	35	384	7.30E-41
PF07714.18	PK_Tyr_Ser-Thr	498	554	3.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.429
	SRR3591706	second leaf	8.077
	SRR3591707	mature leaf	14.109
	SRR3591708	Shoot apex	8.334
	SRR3591709	Stem	18.053
	SRR3591710	White floral bud	16.330
	SRR3591711	White flower	17.573
	SRR3591712	Green floral bud	14.757
	SRR3591713	Yellow flower	9.091
SRP173429	SRR8316895	Juvenile bud stage	10.835
	SRR8316896	Juvenile bud stage	7.051
	SRR8316897	Juvenile bud stage	7.074
	SRR8316894	Third green stage	2.961
	SRR8316900	Third green stage	9.257
	SRR8316901	Third green stage	12.559
	SRR8316898	Complete white stage	5.310
	SRR8316899	Complete white stage	31.052
	SRR8316903	Complete white stage	9.923
	SRR8316902	Silver flowering stage	11.851
	SRR8316904	Silver flowering stage	8.808
	SRR8316905	Silver flowering stage	4.597
	SRR8316906	Gold flowering stage	11.581
	SRR8316907	Gold flowering stage	14.146
	SRR8316908	Gold flowering stage	11.681
SRP132670	SRR6706286	Control	27.415
	SRR6706287	Light intensity 50%	31.114
	SRR6706288	Light intensity 20%	34.460
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.578
	CNS0095593	Slightly white alabastrum(diploid) 2	6.550
	CNS0095594	Slightly white alabastrum(diploid) 3	6.306
	CNS0095595	Whole white alabastrum(diploid) 2	7.098
	CNS0095596	Whole white alabastrum(diploid) 3	4.386
	CNS0095597	Whole white alabastrum(diploid) 4	8.590
	CNS0095598	Silvery flower (diploied) 1	14.288
	CNS0095599	Silvery flower (diploied) 2	14.311
	CNS0095600	Silvery flower (diploied) 3	28.379
	CNS0095601	Golden flower (diploid) 1	11.437
	CNS0095602	Golden flower (diploid) 2	30.652
	CNS0095603	Golden flower (diploid) 3	30.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.589
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.563
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.327
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.869
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.095
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.435
	CNS0095610	Silvery flower (tetraploid) 1	10.995
	CNS0095611	Silvery flower (tetraploid) 2	13.177
	CNS0095612	Silvery flower (tetraploid) 3	11.702
	CNS0095613	Golden flower (tetraploid) 1	3.151
	CNS0095614	Golden flower (tetraploid) 2	7.757
	CNS0095615	Golden flower (tetraploid) 3	6.230
CRA001975	CRR073297	Stem 1	13.861
	CRR073298	Stem 2	12.062
	CRR073299	Stem 3	13.338
	CRR073300	Leaf 1	14.871
	CRR073301	Leaf 2	15.027
	CRR073302	Leaf 3	14.148
	CRR073303	Juvenile bud 1	18.263
	CRR073304	Juvenile bud 2	21.152
	CRR073305	Juvenile bud 3	39.411
	CRR073306	Third green 1	33.158
	CRR073307	Third green 2	36.937
	CRR073308	Third green 3	35.084
	CRR073309	Second white 1	11.382
	CRR073310	Second white 2	7.414
	CRR073311	Second white 3	12.602
	CRR073312	Silver flowering 1	8.829
	CRR073313	Silver flowering 2	8.679
	CRR073314	Silver flowering 3	4.856
	CRR073315	Gold flowering 1	68.460
	CRR073316	Gold flowering 2	96.911
	CRR073317	Gold flowering 3	49.187
	CRR073318	Tawny withering 1	32.219
	CRR073319	Tawny withering 2	25.277
	CRR073320	Tawny withering 3	27.421