Gene detail

Detail information of GWHGAAZE000799

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006366921.1	2.35872E-74	PREDICTED: 60S ribosomal protein L35-like [Solanum tuberosum]
Swissprot	tr\|Q9M5L0\|RL35_EUPES	5E-74	60S ribosomal protein L35
trEMBL	tr\|F4YF94\|F4YF94_CAMSI	1E-73	Ribosomal protein L35 {ECO:0000313\|EMBL:AEC10955.1}
TAIR10	AT2G39390.1	4E-56	Ribosomal L29 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	16166938	16170355	+
GWHAAZE00000001	mRNA	16166938	16170355	+
GWHAAZE00000001	exon	16166938	16166941	+
GWHAAZE00000001	exon	16167053	16167188	+
GWHAAZE00000001	exon	16167654	16167810	+
GWHAAZE00000001	exon	16170056	16170355	+
GWHAAZE00000001	CDS	16166938	16166941	+
GWHAAZE00000001	CDS	16167053	16167188	+
GWHAAZE00000001	CDS	16167654	16167810	+
GWHAAZE00000001	CDS	16170056	16170130	+
GWHAAZE00000001	three_prime_UTR	16170131	16170355	+

Transcript Sequence
>GWHTAAZE000801 ATGGCGAGGATCAAGGTTCACGAGCTGAGGCAGAAATCAAAGGCAGATCTTTTGAGCCAATTGAAGGATCTTAAAACCGAACTTGCTCTCCTCCGTGTTGCCAAGGTTACCGGCGGTGCTCCCAACAAGCTCTCCAAGATAAAAGTGGTGAGGTTGTCAATAGCGCAGGTGTTGACAGTGATTCAACAGAAGCAAAAGGCGGTATTGAGGGAAGCCTACAAGAATAAGAAGTACATGCCCCTTGATCTTCGTCCTAAGAAGACCAGAGCCATTCGAAAACGCCTCACTAAGCATCAGGCATCTTTGAAGACAGAGCGAGAGAAGAAGAAAGAAATGTATTTTCCAATGAGGAAGTACGCCATTAGGGTTTAGTTTTTGATTTAATTCAGAGAGACTGAAGAAACCGGTCTCTTGAGAGAGGGAAACAACGAGAGTAGGGGGTTTGAGTTTTTTTCGCATTTGAACTATTTTTTTTTTTGTGTCTTGTGTTAGAATTTACCCATTATGGAATGATATCTTTTGCTTTTTTGCAGTTCTGTTTTTACGTGAATTTGTGTTTATTTTTCTTTTGCCTCGTTTAATGCTGAATGCATTCAG

Network for GWHGAAZE000799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00831.24	Ribosomal_L29	8	64	1.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02918	RP-L35e, RPL35	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	190.322
	SRR3591706	second leaf	75.638
	SRR3591707	mature leaf	37.518
	SRR3591708	Shoot apex	244.251
	SRR3591709	Stem	90.342
	SRR3591710	White floral bud	75.406
	SRR3591711	White flower	84.051
	SRR3591712	Green floral bud	194.928
	SRR3591713	Yellow flower	50.221
SRP173429	SRR8316895	Juvenile bud stage	87.194
	SRR8316896	Juvenile bud stage	132.000
	SRR8316897	Juvenile bud stage	76.792
	SRR8316894	Third green stage	57.798
	SRR8316900	Third green stage	174.511
	SRR8316901	Third green stage	164.703
	SRR8316898	Complete white stage	21.160
	SRR8316899	Complete white stage	101.552
	SRR8316903	Complete white stage	35.725
	SRR8316902	Silver flowering stage	25.809
	SRR8316904	Silver flowering stage	22.990
	SRR8316905	Silver flowering stage	12.213
	SRR8316906	Gold flowering stage	33.684
	SRR8316907	Gold flowering stage	28.554
	SRR8316908	Gold flowering stage	36.286
SRP132670	SRR6706286	Control	214.682
	SRR6706287	Light intensity 50%	197.599
	SRR6706288	Light intensity 20%	224.900
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	206.104
	CNS0095593	Slightly white alabastrum(diploid) 2	226.575
	CNS0095594	Slightly white alabastrum(diploid) 3	232.931
	CNS0095595	Whole white alabastrum(diploid) 2	174.396
	CNS0095596	Whole white alabastrum(diploid) 3	209.295
	CNS0095597	Whole white alabastrum(diploid) 4	155.669
	CNS0095598	Silvery flower (diploied) 1	74.663
	CNS0095599	Silvery flower (diploied) 2	69.087
	CNS0095600	Silvery flower (diploied) 3	44.741
	CNS0095601	Golden flower (diploid) 1	66.977
	CNS0095602	Golden flower (diploid) 2	43.305
	CNS0095603	Golden flower (diploid) 3	42.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	190.272
	CNS0095605	Slightly white alabastrum(tetraploid) 2	206.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	160.688
	CNS0095607	Whole white alabastrum(tetraploid) 1	149.302
	CNS0095608	Whole white alabastrum(tetraploid) 2	123.225
	CNS0095609	Whole white alabastrum(tetraploid) 3	150.396
	CNS0095610	Silvery flower (tetraploid) 1	44.934
	CNS0095611	Silvery flower (tetraploid) 2	37.131
	CNS0095612	Silvery flower (tetraploid) 3	24.152
	CNS0095613	Golden flower (tetraploid) 1	22.159
	CNS0095614	Golden flower (tetraploid) 2	31.029
	CNS0095615	Golden flower (tetraploid) 3	16.327
CRA001975	CRR073297	Stem 1	156.794
	CRR073298	Stem 2	137.896
	CRR073299	Stem 3	128.282
	CRR073300	Leaf 1	132.000
	CRR073301	Leaf 2	144.570
	CRR073302	Leaf 3	156.487
	CRR073303	Juvenile bud 1	127.007
	CRR073304	Juvenile bud 2	89.621
	CRR073305	Juvenile bud 3	98.713
	CRR073306	Third green 1	14.092
	CRR073307	Third green 2	18.742
	CRR073308	Third green 3	17.044
	CRR073309	Second white 1	13.132
	CRR073310	Second white 2	11.986
	CRR073311	Second white 3	7.548
	CRR073312	Silver flowering 1	12.174
	CRR073313	Silver flowering 2	16.055
	CRR073314	Silver flowering 3	13.708
	CRR073315	Gold flowering 1	37.076
	CRR073316	Gold flowering 2	39.336
	CRR073317	Gold flowering 3	30.303
	CRR073318	Tawny withering 1	112.918
	CRR073319	Tawny withering 2	91.040
	CRR073320	Tawny withering 3	109.183