Gene detail

Detail information of GWHGAAZE000778

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN32110.1	1.5741E-108	RNA and export factor-binding protein 2 [Glycine soja]
Swissprot	tr\|Q8L773\|THO4A_ARATH	6E-79	THO complex subunit 4A
trEMBL	tr\|I1LK48\|I1LK48_SOYBN	7E-108	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G15040.4}
TAIR10	AT5G59950.5	1E-55	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15745623	15749412	-
GWHAAZE00000001	mRNA	15745623	15749412	-
GWHAAZE00000001	exon	15745623	15745800	-
GWHAAZE00000001	exon	15746343	15746527	-
GWHAAZE00000001	exon	15746620	15746688	-
GWHAAZE00000001	exon	15748615	15748770	-
GWHAAZE00000001	exon	15749236	15749412	-
GWHAAZE00000001	CDS	15749236	15749412	-
GWHAAZE00000001	CDS	15748615	15748770	-
GWHAAZE00000001	CDS	15746620	15746688	-
GWHAAZE00000001	CDS	15746343	15746527	-
GWHAAZE00000001	CDS	15745623	15745800	-

Transcript Sequence
>GWHTAAZE000780 ATGGCCGGTGCAGCTCTGGACATGACTCTCGACGATCTCATCAAGAACAATAAGAAGTCCTCCGCCGGCGGCGGCAGAGGCCGTGGTCGCCACTCCGGCACCGGATCCGGATCCGGCCCCGCACGCCGCCTCCCCAATCGCGCCGCGAATCGATCTGCTCCCTACTCTACCACAAAGGCTCCAGATTCGGCTTGGAATCACGATATGTTCACCGGAGATCAGGATATGATGAATCAGGGACATATTGGTGGTGGTCGAACTTCATCTATAGAGACTGGAACGAAGCTCTACATATCAAATCTTGATTACGGTGTTTCAAACGAGGACATCAAGGAACTCTTTGCAGAAGTTGGTGACCTAAAACGATATTCAGTACATTATGATAGGAGCGGGAGATCAAAGGGAACGGCAGAAATCGTCTTTTCAAGACGCCAGGATGCTTTAGCAGCTGTCAAGAGGTACAACAATGTTCAGCTCGATGGAAAGCCGATGAAAATCGAGATTGTGGGAACTAACATTTCCACTCCGGCTTCTGGGCCTCCAGCTTTCAACGGTGCTGGTGGAAACTTTAGTGGAGTTCCAAGAAGTGGACAAGGAAGGGGTGGTGGATTTGGTGGAAGGTCACGCAATGGTGGCAACAGAGGTCGAGGATTTGGGAGAGGGGGCCGTGGACGTGGAAGAGCCGCCCCTGGTGAGAAGATATCTGCAGATGATCTTGACGCTGATTTGGAGAAGTATCATACTGAATCAATGCAGACAAATTAA

Network for GWHGAAZE000778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	96	164	1.20E-14
PF13865.7	FoP_duplication	192	250	1.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12881	THOC4, ALY	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	190.958
	SRR3591706	second leaf	110.011
	SRR3591707	mature leaf	161.581
	SRR3591708	Shoot apex	176.798
	SRR3591709	Stem	220.416
	SRR3591710	White floral bud	180.105
	SRR3591711	White flower	194.438
	SRR3591712	Green floral bud	221.003
	SRR3591713	Yellow flower	118.652
SRP173429	SRR8316895	Juvenile bud stage	98.047
	SRR8316896	Juvenile bud stage	153.933
	SRR8316897	Juvenile bud stage	61.315
	SRR8316894	Third green stage	64.081
	SRR8316900	Third green stage	159.959
	SRR8316901	Third green stage	182.525
	SRR8316898	Complete white stage	74.477
	SRR8316899	Complete white stage	287.464
	SRR8316903	Complete white stage	118.597
	SRR8316902	Silver flowering stage	80.030
	SRR8316904	Silver flowering stage	83.225
	SRR8316905	Silver flowering stage	40.964
	SRR8316906	Gold flowering stage	124.826
	SRR8316907	Gold flowering stage	133.554
	SRR8316908	Gold flowering stage	140.517
SRP132670	SRR6706286	Control	233.756
	SRR6706287	Light intensity 50%	237.106
	SRR6706288	Light intensity 20%	247.245
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	135.811
	CNS0095593	Slightly white alabastrum(diploid) 2	131.402
	CNS0095594	Slightly white alabastrum(diploid) 3	113.572
	CNS0095595	Whole white alabastrum(diploid) 2	115.342
	CNS0095596	Whole white alabastrum(diploid) 3	101.660
	CNS0095597	Whole white alabastrum(diploid) 4	101.424
	CNS0095598	Silvery flower (diploied) 1	124.327
	CNS0095599	Silvery flower (diploied) 2	104.888
	CNS0095600	Silvery flower (diploied) 3	153.993
	CNS0095601	Golden flower (diploid) 1	130.575
	CNS0095602	Golden flower (diploid) 2	158.026
	CNS0095603	Golden flower (diploid) 3	153.302
	CNS0095604	Slightly white alabastrum(tetraploid) 1	153.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	135.808
	CNS0095606	Slightly white alabastrum(tetraploid) 3	256.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	106.857
	CNS0095608	Whole white alabastrum(tetraploid) 2	91.850
	CNS0095609	Whole white alabastrum(tetraploid) 3	174.488
	CNS0095610	Silvery flower (tetraploid) 1	150.345
	CNS0095611	Silvery flower (tetraploid) 2	168.845
	CNS0095612	Silvery flower (tetraploid) 3	109.133
	CNS0095613	Golden flower (tetraploid) 1	104.105
	CNS0095614	Golden flower (tetraploid) 2	130.283
	CNS0095615	Golden flower (tetraploid) 3	160.826
CRA001975	CRR073297	Stem 1	195.919
	CRR073298	Stem 2	185.395
	CRR073299	Stem 3	214.610
	CRR073300	Leaf 1	216.730
	CRR073301	Leaf 2	214.372
	CRR073302	Leaf 3	218.702
	CRR073303	Juvenile bud 1	209.885
	CRR073304	Juvenile bud 2	166.240
	CRR073305	Juvenile bud 3	222.206
	CRR073306	Third green 1	133.052
	CRR073307	Third green 2	130.425
	CRR073308	Third green 3	132.788
	CRR073309	Second white 1	126.361
	CRR073310	Second white 2	115.431
	CRR073311	Second white 3	90.168
	CRR073312	Silver flowering 1	65.097
	CRR073313	Silver flowering 2	78.900
	CRR073314	Silver flowering 3	66.906
	CRR073315	Gold flowering 1	146.265
	CRR073316	Gold flowering 2	155.636
	CRR073317	Gold flowering 3	170.972
	CRR073318	Tawny withering 1	172.151
	CRR073319	Tawny withering 2	174.307
	CRR073320	Tawny withering 3	186.878