Gene detail

Detail information of GWHGAAZE000764

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632149.1	0	PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera]
Swissprot	tr\|Q8GUH1\|PUB33_ARATH	8E-168	Serine/threonine-protein kinase
trEMBL	tr\|F6GV18\|F6GV18_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43577.1}
TAIR10	AT2G45910.1	2E-137	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15445481	15454338	-
GWHAAZE00000001	mRNA	15445481	15454338	-
GWHAAZE00000001	exon	15454059	15454338	-
GWHAAZE00000001	exon	15453357	15453475	-
GWHAAZE00000001	exon	15452984	15453093	-
GWHAAZE00000001	exon	15449567	15450047	-
GWHAAZE00000001	exon	15448557	15449108	-
GWHAAZE00000001	exon	15447366	15448085	-
GWHAAZE00000001	exon	15445481	15445663	-
GWHAAZE00000001	CDS	15454059	15454338	-
GWHAAZE00000001	CDS	15453357	15453475	-
GWHAAZE00000001	CDS	15452984	15453093	-
GWHAAZE00000001	CDS	15449567	15450047	-
GWHAAZE00000001	CDS	15448557	15449108	-
GWHAAZE00000001	CDS	15447366	15448085	-
GWHAAZE00000001	CDS	15445481	15445663	-

Transcript Sequence
>GWHTAAZE000766 ATGGAGCTTCTATCACCTTCTCATCCTCCTGGCCCTAACGGAGATCAATTATCTAGGGCTTCAGTTTCACCTCCCGCGAATGTCCGAGAAGGGGATCGGCGAACGCTGAATTCTCACTCGCCGGAGGATTCTGAAGAAGGTTTTGATAAGGTGTATGTGGCGGTCGGAAAGTCTATGACTAAAGCCGTCGATTTGCTTCACTGGAGTTTCGAGCGGTTTGGTAATCGAGAAATTTGTATTTTGCATGTTCATCAACCTTCTCCTACGATTCCTACTCTCTTGGGAAAATTACCGGTAAGGCAAGCGAATGACGAAGTTGTGTCTGCATATAGAAGGGAGGAGAGAGAACAGATGAAGAAACTTCTACATAACTACTTGACCATATGCTTCAGATCGAAGGTTAGAGCATGCACCATGACAACCGAGGCTGACCAAGTTCAAAAGGGAATTGTAGATCTGGTGCATGAGCATGGTATTCGGAAGCTTGTTATGGAAGCTGTTCCCGAGAATTGGATGAAGGTGAAAAAATTCTCTAGCAAAGCTAGTTACGTTGCCCAAAATGCCCCTTCATTCTGTCAGATATGGTTTGTAAACAAACACAAGCTTGTGTGGGTGAGAGAAGCATCTGAGAGCCCAGGCTCTGTGCCACCAATTAGCCAAGCAGATTCTGATACTTCACGAGTTTCAAGGTCCCAATCACTGCGTCATCAAAAGAGTGAAGTACTCCTATGCAATCCGGAGTTTCTTCGGTCCAGCTCCACTAGAAGCGTACTTAGTGCTGGAACTAGGAGTTGGGATCATATGGAAGATGTTTTTCCTTTTGCTGAACAAAGGGTGGCTTCAGTTTCTGACCCAAAGGCTGAGGAAGAAAGTTTATATAGTCAGCTTGCAGAAGTAAAAATAGAAGTGGAAGAATCAAGGAATGAAGCATTTGGAGAGGTATTGAGACGCAAAAATTTGGAAGCTGAAGCTGTAGATGCCATCAGTAAGGTAAAAGCTTTTGAAGCTGCTCAAGCACGTGAAGTAGAACTCAGGGAAGAGGCTGGTGATGCACTGAGAAGTGCGATAGAGGAACAAGAAAAACTCTTGGAAGAAAGAGAAGCAGTAATGAAACAGCTGCAGAAGGCCATGAGAAACATAGCTCTCCTCGATAGTCGTGCAATTGAAGCAAACCGTCGGTGTGAAGAAGCTGCTGGAGAATTAAGACTTGTCCAAGCCTCCATTGCAACTCTTCGGCAAGAAAAGCAGAAAATTCAGCGGCAAAAAGTTGAAGCGATGCGTTGGCTTGACCGGTGGAAAAATCACGGACAAGACGAAGGTGAAATTTACAACGGGTTTGGTGGGTTTAGTGAAGACTCAACAAAGGTGGCTGAGTTTTTGTTGTCAGATCTGCAAACTGCAACTTGCGATTTTTCCGAGTGCTTCAAGATTGGGCAGGGTGGGCATGGTTGTGTATACAAGGGGGAAATGTTGGATCGAACAGTTGCTATAAAGCAGCTTCATCCTCGTACCATGCAAGGGCAATCTGAGTTTCAGCTAGAGGTTCAAGTTCTTGGAAAAATACAACACCCTCATCTGGTGACATTGATTGGTGTATGTCCAGAAGCCTGGTCTGTCATTTATGAGTACTTGCCCAATGGGAACCTCCAGGATCGCCTATTCCGAAGAAGTAATATTCACTCCCTCAACTGGAAAACCCGAGCTCGAATCATTGCGGAAATCGCAAGCGCCCTTTTGTTATTGCACTCCAAACCCAAAAACACAGTACACGGCAATCTAAAGCCAGAAAACATCCTTCTTGATTCCGAACTTAGCTGCAAAATATCTGATTTTGGTATTTCTAGGCTGGTTTCCAAAGAGACCCTCCGCTGCCCTAGCTTTCGCCAGTATACTGAACCAAAGGGTGCTTTCCCATATACGGATCCAGAGTTTCGTCGAACTGGGCTTTTGACGGCTAAATCTGACATTTATTCATTTGGACTTATCATTCTTCAGCTGCTCACTGGTCGGTCTCCTGCAGGATTGGCCATTGAAGTGCACAAGGCGGTCTCCTGTGAAAAATTATCGCACATGATGGATTCATCTGCAGGAGAGTGGCCGACATTTATTGCAAACAGATTGGTCGAGGTGGGTTTGCAGTGCTGCGAACTAAATGGTAAGGATAGGCCGGAGATAACGCCGTCTCTAGTTAGGGAATTGGAGAAGTTGCATGTTTTGGAAGAGCAACCAGTTCCATCTTTCTTCTTATGTCCTATCCGTCAGGATATAATGCATGACCCTCAGGTGGCAGCAGATGGGTTCACCTACGAAGGAGAAGCCTTGCGTGGATGGTTGGAAAATGGCCGGGATACTTCTCCGATGACCAACTTGAAATTGGAACACTTGCATCTCACTCCTAATCATGCTCTGAGGCTCGCCATTCAAGAATGGCTTTGCAAATCTTGA

Network for GWHGAAZE000764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	476	726	4.30E-38
PF04564.16	U-box	744	813	1.60E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0006468	biological_process	protein phosphorylation
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.845
	SRR3591706	second leaf	6.255
	SRR3591707	mature leaf	10.872
	SRR3591708	Shoot apex	8.847
	SRR3591709	Stem	14.384
	SRR3591710	White floral bud	7.253
	SRR3591711	White flower	16.819
	SRR3591712	Green floral bud	6.973
	SRR3591713	Yellow flower	8.654
SRP173429	SRR8316895	Juvenile bud stage	4.976
	SRR8316896	Juvenile bud stage	6.551
	SRR8316897	Juvenile bud stage	2.673
	SRR8316894	Third green stage	2.259
	SRR8316900	Third green stage	5.651
	SRR8316901	Third green stage	5.565
	SRR8316898	Complete white stage	2.558
	SRR8316899	Complete white stage	8.631
	SRR8316903	Complete white stage	5.148
	SRR8316902	Silver flowering stage	3.586
	SRR8316904	Silver flowering stage	5.954
	SRR8316905	Silver flowering stage	2.336
	SRR8316906	Gold flowering stage	7.959
	SRR8316907	Gold flowering stage	6.194
	SRR8316908	Gold flowering stage	8.349
SRP132670	SRR6706286	Control	7.081
	SRR6706287	Light intensity 50%	7.217
	SRR6706288	Light intensity 20%	7.538
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.716
	CNS0095593	Slightly white alabastrum(diploid) 2	5.501
	CNS0095594	Slightly white alabastrum(diploid) 3	4.478
	CNS0095595	Whole white alabastrum(diploid) 2	4.552
	CNS0095596	Whole white alabastrum(diploid) 3	2.689
	CNS0095597	Whole white alabastrum(diploid) 4	3.890
	CNS0095598	Silvery flower (diploied) 1	7.399
	CNS0095599	Silvery flower (diploied) 2	5.935
	CNS0095600	Silvery flower (diploied) 3	8.372
	CNS0095601	Golden flower (diploid) 1	9.040
	CNS0095602	Golden flower (diploid) 2	11.667
	CNS0095603	Golden flower (diploid) 3	10.877
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.500
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.673
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.385
	CNS0095610	Silvery flower (tetraploid) 1	10.825
	CNS0095611	Silvery flower (tetraploid) 2	10.128
	CNS0095612	Silvery flower (tetraploid) 3	7.262
	CNS0095613	Golden flower (tetraploid) 1	5.880
	CNS0095614	Golden flower (tetraploid) 2	11.521
	CNS0095615	Golden flower (tetraploid) 3	11.797
CRA001975	CRR073297	Stem 1	12.064
	CRR073298	Stem 2	11.889
	CRR073299	Stem 3	10.968
	CRR073300	Leaf 1	12.281
	CRR073301	Leaf 2	10.576
	CRR073302	Leaf 3	9.002
	CRR073303	Juvenile bud 1	10.685
	CRR073304	Juvenile bud 2	7.527
	CRR073305	Juvenile bud 3	13.388
	CRR073306	Third green 1	5.080
	CRR073307	Third green 2	3.104
	CRR073308	Third green 3	4.721
	CRR073309	Second white 1	4.344
	CRR073310	Second white 2	5.714
	CRR073311	Second white 3	5.401
	CRR073312	Silver flowering 1	3.885
	CRR073313	Silver flowering 2	3.972
	CRR073314	Silver flowering 3	3.523
	CRR073315	Gold flowering 1	6.165
	CRR073316	Gold flowering 2	9.359
	CRR073317	Gold flowering 3	8.946
	CRR073318	Tawny withering 1	14.603
	CRR073319	Tawny withering 2	11.478
	CRR073320	Tawny withering 3	9.090