Gene detail

Detail information of GWHGAAZE000753

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006424836.1	0	hypothetical protein CICLE_v10028570mg [Citrus clementina]
Swissprot	tr\|Q06548\|APK1A_ARATH	0	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|V4SC26\|V4SC26_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR38077.1}
TAIR10	AT1G07570.2	9E-159	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	15202118	15204679	-
GWHAAZE00000001	mRNA	15202118	15204679	-
GWHAAZE00000001	exon	15202118	15202560	-
GWHAAZE00000001	exon	15203366	15203489	-
GWHAAZE00000001	exon	15203599	15203741	-
GWHAAZE00000001	exon	15203859	15203994	-
GWHAAZE00000001	exon	15204249	15204580	-
GWHAAZE00000001	exon	15204670	15204679	-
GWHAAZE00000001	CDS	15204670	15204679	-
GWHAAZE00000001	CDS	15204249	15204580	-
GWHAAZE00000001	CDS	15203859	15203994	-
GWHAAZE00000001	CDS	15203599	15203741	-
GWHAAZE00000001	CDS	15203366	15203489	-
GWHAAZE00000001	CDS	15202118	15202560	-

Transcript Sequence
>GWHTAAZE000755 ATGTCAAATGGCTCAGCTGTAAATTCAAGATGTATTAGCACAGATGGTATTGATATGGGCCGGTCGAGTAGCAAGGTATCTTCAGTGTCTGTCCCACTGACTCCCAGAAGCGAGGGCGAGATTCTGCAGTCTTCCAATTTGAAGAGCTTTAGTTTCATCAATCTCAAAACCGCCACAAGGAACTTTCGCCCAGATAGTGTGCTGGGAGAGGGTGGATTTGGCTCGGTTTTCAAGGGCTGGATCGACAAACACTCATTTGCAGCTACTAAGCCTGGGACCGGCATGGTTATAGCCGTTAAAAGGCTTAACCAAGATGGTCTCCAAGGTCACAAGGAGTGGCTGGCCGAAGTAAATTACCTGGGGCAGCTCTATCATCCTAATCTCGTAAAACTTATCGGCTATTGTTTCGAGGATGATCACCGACTCTTAGTGTATGAGTTCATGCCTCGAGGCAGCTTGGACAATCATTTATTCAGGAGAGGATCTTATTTCCAGCCTCTTTCTTGGAACCTTCGTCTCAAGGTCGCTCTTGGAGCTGCAAGGGGGCTCGCTTTCCTTCACAGTGCTGAGACTAAAGTGATATATAGGGACTTCAAGACCTCTAATATTTTGCTTGATTCGAACTACAATGCAAAACTCTCTGATTTCGGGTTGGCCAAGGATGGACCAACTGGTGATAAAAGCCATGTCTCTACGAGGGTCATGGGAACCTATGGATATGCTGCCCCAGAATATCTCGCCACCGGTCATTTATCCGCAAGGAGTGATGTGTATAGCTTTGGAGTAGTTCTTCTCGAAATGCTATCTGGCCGAAGAGCAGTGGACAAGAACAGACCAACTGGAGAACACAACCTTGTGGAATGGGCCAAGCCGTACCTAGCCAACAAACGTAAAATCTTCCGCGTAGTGGACAACCGGCTCGAGGGTCAGTACATGTTGGATGTGGCCCACACTACGGCTAACCTTGCCTTGCAGTGCCTATCAACTGAACCCAAGTCTAGGCCCAAGATGGATGAGGTGGTCAAAGAATTAGAGCAACTTCAAGATTCAAAGGTAACAAGACCACCAACTCGAAGGAACACCAATAGTGGGCCCCGACCCCGTAAAAGAAGTACTGCTGATGTCAGCAATGGAAATGGGCCGGCCGCTTATCCAAGGCCGTCGGCTTCTCCACTCTATACGAAGTGA

Network for GWHGAAZE000753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	66	344	7.80E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.541
	SRR3591706	second leaf	8.776
	SRR3591707	mature leaf	14.938
	SRR3591708	Shoot apex	8.044
	SRR3591709	Stem	7.398
	SRR3591710	White floral bud	29.757
	SRR3591711	White flower	60.948
	SRR3591712	Green floral bud	50.207
	SRR3591713	Yellow flower	41.125
SRP173429	SRR8316895	Juvenile bud stage	18.044
	SRR8316896	Juvenile bud stage	27.758
	SRR8316897	Juvenile bud stage	19.168
	SRR8316894	Third green stage	11.994
	SRR8316900	Third green stage	29.105
	SRR8316901	Third green stage	34.150
	SRR8316898	Complete white stage	7.533
	SRR8316899	Complete white stage	85.987
	SRR8316903	Complete white stage	10.553
	SRR8316902	Silver flowering stage	15.748
	SRR8316904	Silver flowering stage	19.723
	SRR8316905	Silver flowering stage	9.764
	SRR8316906	Gold flowering stage	36.541
	SRR8316907	Gold flowering stage	31.137
	SRR8316908	Gold flowering stage	47.419
SRP132670	SRR6706286	Control	30.632
	SRR6706287	Light intensity 50%	36.359
	SRR6706288	Light intensity 20%	40.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.962
	CNS0095593	Slightly white alabastrum(diploid) 2	34.338
	CNS0095594	Slightly white alabastrum(diploid) 3	25.414
	CNS0095595	Whole white alabastrum(diploid) 2	26.398
	CNS0095596	Whole white alabastrum(diploid) 3	16.824
	CNS0095597	Whole white alabastrum(diploid) 4	29.314
	CNS0095598	Silvery flower (diploied) 1	37.029
	CNS0095599	Silvery flower (diploied) 2	25.193
	CNS0095600	Silvery flower (diploied) 3	35.324
	CNS0095601	Golden flower (diploid) 1	28.743
	CNS0095602	Golden flower (diploid) 2	46.530
	CNS0095603	Golden flower (diploid) 3	44.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.867
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.518
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.375
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.899
	CNS0095610	Silvery flower (tetraploid) 1	36.680
	CNS0095611	Silvery flower (tetraploid) 2	32.019
	CNS0095612	Silvery flower (tetraploid) 3	52.000
	CNS0095613	Golden flower (tetraploid) 1	28.855
	CNS0095614	Golden flower (tetraploid) 2	48.219
	CNS0095615	Golden flower (tetraploid) 3	45.631
CRA001975	CRR073297	Stem 1	38.589
	CRR073298	Stem 2	37.682
	CRR073299	Stem 3	36.420
	CRR073300	Leaf 1	70.728
	CRR073301	Leaf 2	75.509
	CRR073302	Leaf 3	69.964
	CRR073303	Juvenile bud 1	74.388
	CRR073304	Juvenile bud 2	61.901
	CRR073305	Juvenile bud 3	88.679
	CRR073306	Third green 1	17.172
	CRR073307	Third green 2	18.759
	CRR073308	Third green 3	18.006
	CRR073309	Second white 1	46.640
	CRR073310	Second white 2	36.764
	CRR073311	Second white 3	35.881
	CRR073312	Silver flowering 1	66.213
	CRR073313	Silver flowering 2	82.096
	CRR073314	Silver flowering 3	51.872
	CRR073315	Gold flowering 1	24.545
	CRR073316	Gold flowering 2	27.917
	CRR073317	Gold flowering 3	40.136
	CRR073318	Tawny withering 1	27.725
	CRR073319	Tawny withering 2	26.865
	CRR073320	Tawny withering 3	24.406