Gene detail

Detail information of GWHGAAZE000730

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283159.1	5.6749E-106	PREDICTED: transcription factor PCL1 [Vitis vinifera]
Swissprot	tr\|Q9SNB4\|PCL1_ARATH	2E-80	Transcription factor LUX
trEMBL	tr\|F6GUZ0\|F6GUZ0_VITVI	2E-106	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43549.1}
TAIR10	AT3G46640.2	1E-65	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14716792	14717691	-
GWHAAZE00000001	mRNA	14716792	14717691	-
GWHAAZE00000001	exon	14717442	14717691	-
GWHAAZE00000001	exon	14717012	14717390	-
GWHAAZE00000001	exon	14716792	14716981	-
GWHAAZE00000001	CDS	14717442	14717691	-
GWHAAZE00000001	CDS	14717012	14717390	-
GWHAAZE00000001	CDS	14716792	14716981	-

Transcript Sequence
>GWHTAAZE000732 ATGAGTGACTATGGCGGTGACGATGAAGACCGAGTGTCGGAGTGGGAGGTAGGTTTGCCGTCTGCCGACGATCTAACGCCGCTGTCGCAGTACCTGATCCCGCCGGAGCTCTCGTCTGCGTTCAGCATCACGCCGGAGCCTCATCGGAGCATGCTCGAGGTAAATCGTGCTTCTCAAAACACTATGTCGAGTCTTCGAGGCCAATCTCAGGCCTTATCTCCAACGAATCAGACTAATTTCAAGTCATTCGAAGTGGATGATATAGATCTGAGCCCGGATGGTTCGGATTCGAGGAAAATCAGGCGAATCCACGGCGAGGTTACGGACTCGGTTCCCGGTAACGATGATATGTCTGCTAAGGCTTCGAAACGGCCTCGTTTGGTTTGGACGCCTCAATTGCACAAAAGGTTTGTGGATGTTGTTGCACATTTAGGTATAAAAAATGCTGTTCCAAAAACTATTATGCAATTGATGAATGTTGAAGGGTTAACTCGAGAAAACGTAGCTAGTCATTTACAGAAGTATAGACTTTATTTGAAGAGAATGGAAGGTTGTTCCGATGAGGCTCCTTCAGCTTCAGATCATTTATTCGCCTCGACTCCGGTCCCTCAGAGTTTACACGAGTCCGGCGGACACGTGTCGGCTCCGATGCCGTATCCTCCACAAATGGTGCCGTTTTATGGGCATATGGGGATGCCAGGTGGCGGTGGTAATACGGCGGTACCGCCTGGTTCTTATCATGGCTTCGAGTCTCATCCGTATAATATGGTGCAGCACAGAGACTGGTCTGGAAGTAAGTTCGGTCCGTATCACTCCTAA

Network for GWHGAAZE000730

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	128	176	9.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.236
	SRR3591706	second leaf	2.404
	SRR3591707	mature leaf	0.528
	SRR3591708	Shoot apex	4.544
	SRR3591709	Stem	9.756
	SRR3591710	White floral bud	11.934
	SRR3591711	White flower	9.929
	SRR3591712	Green floral bud	19.323
	SRR3591713	Yellow flower	2.450
SRP173429	SRR8316895	Juvenile bud stage	4.562
	SRR8316896	Juvenile bud stage	5.023
	SRR8316897	Juvenile bud stage	2.957
	SRR8316894	Third green stage	2.629
	SRR8316900	Third green stage	9.835
	SRR8316901	Third green stage	7.411
	SRR8316898	Complete white stage	2.660
	SRR8316899	Complete white stage	15.707
	SRR8316903	Complete white stage	6.716
	SRR8316902	Silver flowering stage	2.816
	SRR8316904	Silver flowering stage	3.954
	SRR8316905	Silver flowering stage	1.506
	SRR8316906	Gold flowering stage	1.985
	SRR8316907	Gold flowering stage	1.705
	SRR8316908	Gold flowering stage	2.474
SRP132670	SRR6706286	Control	4.540
	SRR6706287	Light intensity 50%	4.426
	SRR6706288	Light intensity 20%	5.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.140
	CNS0095593	Slightly white alabastrum(diploid) 2	9.333
	CNS0095594	Slightly white alabastrum(diploid) 3	5.514
	CNS0095595	Whole white alabastrum(diploid) 2	10.653
	CNS0095596	Whole white alabastrum(diploid) 3	5.441
	CNS0095597	Whole white alabastrum(diploid) 4	12.367
	CNS0095598	Silvery flower (diploied) 1	6.736
	CNS0095599	Silvery flower (diploied) 2	4.184
	CNS0095600	Silvery flower (diploied) 3	7.208
	CNS0095601	Golden flower (diploid) 1	2.158
	CNS0095602	Golden flower (diploid) 2	4.697
	CNS0095603	Golden flower (diploid) 3	6.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.893
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.147
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.440
	CNS0095610	Silvery flower (tetraploid) 1	6.253
	CNS0095611	Silvery flower (tetraploid) 2	8.655
	CNS0095612	Silvery flower (tetraploid) 3	125.420
	CNS0095613	Golden flower (tetraploid) 1	5.788
	CNS0095614	Golden flower (tetraploid) 2	4.149
	CNS0095615	Golden flower (tetraploid) 3	1.920
CRA001975	CRR073297	Stem 1	31.051
	CRR073298	Stem 2	31.000
	CRR073299	Stem 3	44.155
	CRR073300	Leaf 1	31.373
	CRR073301	Leaf 2	32.197
	CRR073302	Leaf 3	36.928
	CRR073303	Juvenile bud 1	43.538
	CRR073304	Juvenile bud 2	41.939
	CRR073305	Juvenile bud 3	39.972
	CRR073306	Third green 1	20.706
	CRR073307	Third green 2	30.257
	CRR073308	Third green 3	26.513
	CRR073309	Second white 1	37.772
	CRR073310	Second white 2	22.374
	CRR073311	Second white 3	19.407
	CRR073312	Silver flowering 1	23.692
	CRR073313	Silver flowering 2	28.013
	CRR073314	Silver flowering 3	27.470
	CRR073315	Gold flowering 1	38.195
	CRR073316	Gold flowering 2	33.093
	CRR073317	Gold flowering 3	43.403
	CRR073318	Tawny withering 1	50.422
	CRR073319	Tawny withering 2	45.940
	CRR073320	Tawny withering 3	50.636