Gene detail

Detail information of GWHGAAZE000720

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089797.1	1.435E-177	PREDICTED: methylsterol monooxygenase 2-2 [Sesamum indicum]
Swissprot	tr\|Q8VWZ8\|SMO22_ARATH	8E-169	Methylsterol monooxygenase 2-2
trEMBL	tr\|A0A068ULK0\|A0A068ULK0_COFCA	6E-177	Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313\|EMBL:CDP09109.1}
TAIR10	AT1G07420.1	2E-133	sterol 4-alpha-methyl-oxidase 2-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14615173	14620254	+
GWHAAZE00000001	mRNA	14615173	14620254	+
GWHAAZE00000001	exon	14615173	14615316	+
GWHAAZE00000001	exon	14617240	14617385	+
GWHAAZE00000001	exon	14617601	14617720	+
GWHAAZE00000001	exon	14617932	14618144	+
GWHAAZE00000001	exon	14618322	14618402	+
GWHAAZE00000001	exon	14619814	14620254	+
GWHAAZE00000001	CDS	14615173	14615316	+
GWHAAZE00000001	CDS	14617240	14617385	+
GWHAAZE00000001	CDS	14617601	14617720	+
GWHAAZE00000001	CDS	14617932	14618144	+
GWHAAZE00000001	CDS	14618322	14618402	+
GWHAAZE00000001	CDS	14619814	14619898	+
GWHAAZE00000001	three_prime_UTR	14619899	14620254	+

Transcript Sequence
>GWHTAAZE000722 ATGCAGTTTCTGATAACTCATTTCAGTGATTTTCAACTTTCATGTCTTGGAAGTTTCTTCCTCCACGAGAGTGTGTTTTTCTTATCGGGACTTCCTTTCATTTTCTTTGAAAGAGCAGGATGGCTTAGCAAGTACAAAATTCAGATAAAAAACAACACCCCTGCAGCTCAAGAGAAATGTATCACCCGCCTATTGTTGTATCATTTTTGTGTCAATCTACCAGTTATGATTGTTTCCTATCCCGTCTTTAGATTCATGGGCATGCGAAGTAGTCTCCCATTGCCGTCCTGGAATGTAGTTTCAACACAGATTCTGTTCTACTTTATCTTGGAGGATTTTGTATTCTATTGGGGGCATAGGGTTCTGCATACAAAATGGCTATATAAGCATGTCCATAGTGTCCACCACGAGTATGCAACACCCTTTGGTCTGACATCTGAATATGCTCACCCCGCTGAAATACTTTTCCTTGGGTTTGCTACCATTATTGGCCCTGCCGTCACTGGGCCCCATCTGATAACCCTCTGGTTGTGGATGGTACTGCGAGTCTTGGAGACTGTGGAGGCACACTGTGGTTATCATTTCCCGTGGAGCCTTTCCAACTTTTTGCCTTTATATGGAGGTTCTGACTTTCATGACTATCACCATCGACTGCTCTATACCAAGTCAGGAAACTACTCGTCAACTTTTGTTTACATGGACTGGATCTTCGGGACTGATACTGGGTACAGAAAATTGAAGGCTCTGAAAAGCAGCGAAGACGAAGCTGTAACTTCCAGCAAATACTAAGTGGATAGAGAGGAGAGAAATGGAAATTTGAACTTTTTGATTGATGTGGTGCACCACACAGGGTGGGTTCTTAATTGAAGAGAGGATCTTGGTAAAGAAAGGTCTATATTGTTTTTCATCCTCCCTCTTCATCTTGTAATGCAATTGTTTGTGTTCAATTTATGTTTTTCAGAAATATGCTTAAAGCTTCTCAAGGGATAATATTGCCATTTGCTACTTCATGCATGAATGAAGCTCTTTTCGTTGAAATTTGGTTTCTGTTTGTGGATTGTTATCTGTCTTAAACACGGACTGTTATTGGACACTCCTTAATCTTGTTATGGATAAAACTATATATAGATAGGGTTTTGTTTTGG

Network for GWHGAAZE000720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	105	239	1.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14424	SMO2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.740
	SRR3591706	second leaf	27.567
	SRR3591707	mature leaf	23.183
	SRR3591708	Shoot apex	23.430
	SRR3591709	Stem	10.606
	SRR3591710	White floral bud	14.727
	SRR3591711	White flower	9.080
	SRR3591712	Green floral bud	41.600
	SRR3591713	Yellow flower	3.640
SRP173429	SRR8316895	Juvenile bud stage	19.137
	SRR8316896	Juvenile bud stage	29.599
	SRR8316897	Juvenile bud stage	16.131
	SRR8316894	Third green stage	11.729
	SRR8316900	Third green stage	49.481
	SRR8316901	Third green stage	49.033
	SRR8316898	Complete white stage	5.274
	SRR8316899	Complete white stage	21.295
	SRR8316903	Complete white stage	8.933
	SRR8316902	Silver flowering stage	10.455
	SRR8316904	Silver flowering stage	11.053
	SRR8316905	Silver flowering stage	5.676
	SRR8316906	Gold flowering stage	17.382
	SRR8316907	Gold flowering stage	15.293
	SRR8316908	Gold flowering stage	17.115
SRP132670	SRR6706286	Control	15.842
	SRR6706287	Light intensity 50%	14.751
	SRR6706288	Light intensity 20%	17.507
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.670
	CNS0095593	Slightly white alabastrum(diploid) 2	58.855
	CNS0095594	Slightly white alabastrum(diploid) 3	45.722
	CNS0095595	Whole white alabastrum(diploid) 2	66.587
	CNS0095596	Whole white alabastrum(diploid) 3	72.738
	CNS0095597	Whole white alabastrum(diploid) 4	60.687
	CNS0095598	Silvery flower (diploied) 1	16.398
	CNS0095599	Silvery flower (diploied) 2	25.000
	CNS0095600	Silvery flower (diploied) 3	11.715
	CNS0095601	Golden flower (diploid) 1	10.896
	CNS0095602	Golden flower (diploid) 2	9.558
	CNS0095603	Golden flower (diploid) 3	8.774
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.986
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	76.092
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.217
	CNS0095610	Silvery flower (tetraploid) 1	15.717
	CNS0095611	Silvery flower (tetraploid) 2	14.513
	CNS0095612	Silvery flower (tetraploid) 3	5.601
	CNS0095613	Golden flower (tetraploid) 1	4.509
	CNS0095614	Golden flower (tetraploid) 2	7.453
	CNS0095615	Golden flower (tetraploid) 3	1.357
CRA001975	CRR073297	Stem 1	15.263
	CRR073298	Stem 2	15.759
	CRR073299	Stem 3	16.216
	CRR073300	Leaf 1	26.285
	CRR073301	Leaf 2	20.968
	CRR073302	Leaf 3	20.698
	CRR073303	Juvenile bud 1	18.585
	CRR073304	Juvenile bud 2	23.329
	CRR073305	Juvenile bud 3	14.295
	CRR073306	Third green 1	14.038
	CRR073307	Third green 2	12.535
	CRR073308	Third green 3	13.318
	CRR073309	Second white 1	20.556
	CRR073310	Second white 2	17.330
	CRR073311	Second white 3	17.503
	CRR073312	Silver flowering 1	12.620
	CRR073313	Silver flowering 2	10.396
	CRR073314	Silver flowering 3	6.926
	CRR073315	Gold flowering 1	13.203
	CRR073316	Gold flowering 2	17.311
	CRR073317	Gold flowering 3	11.948
	CRR073318	Tawny withering 1	12.306
	CRR073319	Tawny withering 2	11.270
	CRR073320	Tawny withering 3	10.998