Gene detail

Detail information of GWHGAAZE000702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG06913.1	8.00386E-74	hypothetical protein F383_00787 [Gossypium arboreum]
Swissprot	tr\|Q9FIL7\|CRCK1_ARATH	3E-60	Calmodulin-binding receptor-like cytoplasmic kinase 1
trEMBL	tr\|D7SK32\|D7SK32_VITVI	2E-70	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16008.3}
TAIR10	AT5G58940.1	9E-52	calmodulin-binding receptor-like cytoplasmic kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14290595	14294629	+
GWHAAZE00000001	mRNA	14290595	14294629	+
GWHAAZE00000001	exon	14290595	14290825	+
GWHAAZE00000001	exon	14291171	14291339	+
GWHAAZE00000001	exon	14291715	14291804	+
GWHAAZE00000001	exon	14294289	14294629	+
GWHAAZE00000001	CDS	14290595	14290825	+
GWHAAZE00000001	CDS	14291171	14291339	+
GWHAAZE00000001	CDS	14291715	14291804	+
GWHAAZE00000001	CDS	14294289	14294629	+

Transcript Sequence
>GWHTAAZE000704 TCAGTAAATAATTCTTCGGGGAGCAACAGTAAATTCAAGTATCCTGGTTCGGGTGGATCTTATACGGCTTCAGTTGGACAGGTTGGAACAATTAATTTTTCCCTTGAAGATATTTATAGGGCAACTGGGAATTTCTCCCTAGAAAATAAAATTGGAGAAGGAGGGTTTGGTACTGTATACAAGGCCAAGCTAAAAGATGGGACTCTTATTGCTGTTAAGCGCGCTAAAAAGGAATTGTATGACAAGCGGATGTTAGAGGTGTTTAAAAATGAAGTCCTTACCTTATCACAGATTGAGCATCTGAATTTGGTAAGGTTTTTTGGATACCTGGAGCATAAAGATGAACAGATTATTCTAGTTGAATATGTTGGGAATGGAACGCTTCGGGAACATTTGGATGGTGTTCATGGAAATGCGCTTGAGATTGCGGAACGTCTAGACATTGCAATTGATGTAGCTCATGCAGTTACCTATCTGCACATGTATACGGATAAACTATGTACGCAGGCCATGCAGAAACTAAAAGAAGGAGAAGTAGTAATGGCTATGGATCCAAGACTCCGAAGGAGTCCAGCATCCATACCCGTTGTGGAAAAAGTCCTAAAACTTGCTCGACAATGCATTTTGCCTTCAAGACCAACAAGACCCTCCATGAAGAAAAGCGCAGAGGTATTGTGGGCAATTAGAAAAGATTTCAGCGAGAAATCCCTCTCTGGTGCTGCTTCTTCGTCAACTCTTTCTGCAAATATGTTCGAGGGAGATGTTAGAAAGAATCGCCAAAACTTTTTCGGGATTGAAGACAGTGAAAACTATAGATTTCGCTCTGCGTAA

Network for GWHGAAZE000702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	46	160	5.00E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.117
	SRR3591706	second leaf	9.668
	SRR3591707	mature leaf	10.826
	SRR3591708	Shoot apex	9.376
	SRR3591709	Stem	13.495
	SRR3591710	White floral bud	14.491
	SRR3591711	White flower	18.841
	SRR3591712	Green floral bud	15.095
	SRR3591713	Yellow flower	21.143
SRP173429	SRR8316895	Juvenile bud stage	5.226
	SRR8316896	Juvenile bud stage	6.892
	SRR8316897	Juvenile bud stage	3.591
	SRR8316894	Third green stage	3.403
	SRR8316900	Third green stage	10.254
	SRR8316901	Third green stage	11.963
	SRR8316898	Complete white stage	7.360
	SRR8316899	Complete white stage	18.784
	SRR8316903	Complete white stage	8.081
	SRR8316902	Silver flowering stage	6.857
	SRR8316904	Silver flowering stage	7.693
	SRR8316905	Silver flowering stage	4.990
	SRR8316906	Gold flowering stage	17.770
	SRR8316907	Gold flowering stage	14.490
	SRR8316908	Gold flowering stage	18.208
SRP132670	SRR6706286	Control	5.826
	SRR6706287	Light intensity 50%	7.305
	SRR6706288	Light intensity 20%	6.841
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.526
	CNS0095593	Slightly white alabastrum(diploid) 2	6.715
	CNS0095594	Slightly white alabastrum(diploid) 3	5.057
	CNS0095595	Whole white alabastrum(diploid) 2	8.190
	CNS0095596	Whole white alabastrum(diploid) 3	7.228
	CNS0095597	Whole white alabastrum(diploid) 4	6.341
	CNS0095598	Silvery flower (diploied) 1	10.555
	CNS0095599	Silvery flower (diploied) 2	7.472
	CNS0095600	Silvery flower (diploied) 3	12.221
	CNS0095601	Golden flower (diploid) 1	10.887
	CNS0095602	Golden flower (diploid) 2	13.195
	CNS0095603	Golden flower (diploid) 3	12.150
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.070
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.197
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.011
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.240
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.572
	CNS0095610	Silvery flower (tetraploid) 1	13.575
	CNS0095611	Silvery flower (tetraploid) 2	12.950
	CNS0095612	Silvery flower (tetraploid) 3	17.470
	CNS0095613	Golden flower (tetraploid) 1	13.382
	CNS0095614	Golden flower (tetraploid) 2	11.731
	CNS0095615	Golden flower (tetraploid) 3	18.021
CRA001975	CRR073297	Stem 1	6.311
	CRR073298	Stem 2	5.770
	CRR073299	Stem 3	5.762
	CRR073300	Leaf 1	7.124
	CRR073301	Leaf 2	5.674
	CRR073302	Leaf 3	6.359
	CRR073303	Juvenile bud 1	10.075
	CRR073304	Juvenile bud 2	7.140
	CRR073305	Juvenile bud 3	8.214
	CRR073306	Third green 1	6.696
	CRR073307	Third green 2	7.754
	CRR073308	Third green 3	6.026
	CRR073309	Second white 1	8.703
	CRR073310	Second white 2	9.088
	CRR073311	Second white 3	9.915
	CRR073312	Silver flowering 1	8.354
	CRR073313	Silver flowering 2	10.106
	CRR073314	Silver flowering 3	10.636
	CRR073315	Gold flowering 1	5.913
	CRR073316	Gold flowering 2	5.375
	CRR073317	Gold flowering 3	5.115
	CRR073318	Tawny withering 1	7.753
	CRR073319	Tawny withering 2	7.923
	CRR073320	Tawny withering 3	5.754