Gene detail

Detail information of GWHGAAZE000694

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010262780.1	1.2825E-133	PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Nelumbo nucifera]
Swissprot	tr\|O80361\|RK4_TOBAC	1E-123	50S ribosomal protein L4, chloroplastic (Precursor)
trEMBL	tr\|A0A0A0KFB8\|A0A0A0KFB8_CUCSA	5E-131	Uncharacterized protein {ECO:0000313\|EMBL:KGN47102.1}
TAIR10	AT1G07320.4	2E-88	ribosomal protein L4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	14140404	14143816	+
GWHAAZE00000001	mRNA	14140404	14143816	+
GWHAAZE00000001	exon	14140404	14140918	+
GWHAAZE00000001	exon	14141660	14142086	+
GWHAAZE00000001	exon	14143476	14143816	+
GWHAAZE00000001	five_prime_UTR	14140404	14140510	+
GWHAAZE00000001	CDS	14140511	14140918	+
GWHAAZE00000001	CDS	14141660	14142086	+
GWHAAZE00000001	CDS	14143476	14143513	+
GWHAAZE00000001	three_prime_UTR	14143514	14143816	+

Transcript Sequence
>GWHTAAZE000696 GCAAAATCTTCAGTTCCGATAGACTGACTACTACTCCTCCTGCGAGTGTGAGGAGAAGCAGATAACATTGATTTCTCCTCCCTCACTTCAATCTTTCAGAGACAAAAATGGCGACATCTCTAACACTCCCTTCTTCAATCTCTCTCTTCTCATCAACTTTCCTTACTTCCCCCCATTCCGCTAAACTCTTCTCCTCCTTCAAACCCTTAAAGAAACCAATTACTACTACTTCCCTAACCGTTCACTCTCAACTTGCAACTCTCCCTATCCTCTCCTTCGAAGGCCAAAAGGTCGGCGAAACAACCCTCAACGTCAAATCCGCCCCTCCCGACACCGCACGCGCCGTCGTCCACCGCGGCATCACCACAGACCTCCAGAACAAGCGCCGCGGAACCGCCTCCACCCTTACCCGCGCTGAGGTCCGCGGCGGTGGCCGCAAACCCTACCCCCAGAAAAAGACCGGCCGGGCTCGCCGGGGTTCGAATCGTACCCCCCTCCGGCCAGGTGGTGGCGTGATTTTTGGACCCAAACCCCGAGACTGGACCATCAAAATCAACAAGAAAGAGAAGAGATTAGCGATTTCAACAGCATTGGCAAGTGCTGCTGTTAATGGTATTGTGGTTGAGGATTTTGGAGGTAAGTTTGAGAAGCCCAAGACCAAGGAATTTATTGCGGCGTTGAATAGGTGGGGGATTGATCCGAAGGAGAAATCAATGTTTTTGGTTACTGAGGTTGATGATAATGTAATTCTTTCAAGTAGGAATATTGGGACATTGAAGATGTTGACGCCTAGGACTTTGAATCTGTTTGATATATTGAACGCAGATAAGTTGGTGTTTACAAAGCCTGCTTTGGATTACTTGAATGAGGTTTATGGGGAGGGTTATTTTGATGGGGAGAGTGAAGAGGAGGAGGGTGAAATTGAAGAAGAAGATGATGAAGGAACCGAAGAAGGTGAGAATGCTGAAGTAACAGAGTGACGGAGAAAACCTGTTTTAGGCCCAGTGCATCTCAATCCAGATATTTCTGATGCATGTATCACCTGTTGTTACAATTTACCTCTCATATTCATGAACATTGCTTTAACCCGATTTTTGTAGTGTATCTATATTATTACTAGACTCTATTGTAAGTATTTTGCTCTGTTATAGTTTTAACATTGTTTCATGCATCCGAAGATTTGCTATATAACCTCTATGCTTTTAGGGTTTTTTCAGGTCGTACTGATTAACTTTACCCTCATGTGTCTCAAATAATAGTTTCATTTTATAAGTTTACTAAGA

Network for GWHGAAZE000694

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00573.23	Ribosomal_L4	77	254	4.60E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02926	RP-L4, MRPL4, rplD	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.649
	SRR3591706	second leaf	114.542
	SRR3591707	mature leaf	51.913
	SRR3591708	Shoot apex	135.862
	SRR3591709	Stem	21.094
	SRR3591710	White floral bud	13.714
	SRR3591711	White flower	10.816
	SRR3591712	Green floral bud	49.984
	SRR3591713	Yellow flower	3.148
SRP173429	SRR8316895	Juvenile bud stage	38.042
	SRR8316896	Juvenile bud stage	38.757
	SRR8316897	Juvenile bud stage	37.516
	SRR8316894	Third green stage	17.975
	SRR8316900	Third green stage	61.887
	SRR8316901	Third green stage	50.037
	SRR8316898	Complete white stage	4.906
	SRR8316899	Complete white stage	37.843
	SRR8316903	Complete white stage	7.654
	SRR8316902	Silver flowering stage	1.495
	SRR8316904	Silver flowering stage	1.503
	SRR8316905	Silver flowering stage	1.036
	SRR8316906	Gold flowering stage	3.179
	SRR8316907	Gold flowering stage	2.983
	SRR8316908	Gold flowering stage	10.617
SRP132670	SRR6706286	Control	72.014
	SRR6706287	Light intensity 50%	62.282
	SRR6706288	Light intensity 20%	65.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.750
	CNS0095593	Slightly white alabastrum(diploid) 2	35.173
	CNS0095594	Slightly white alabastrum(diploid) 3	27.699
	CNS0095595	Whole white alabastrum(diploid) 2	34.364
	CNS0095596	Whole white alabastrum(diploid) 3	35.677
	CNS0095597	Whole white alabastrum(diploid) 4	27.692
	CNS0095598	Silvery flower (diploied) 1	37.537
	CNS0095599	Silvery flower (diploied) 2	28.924
	CNS0095600	Silvery flower (diploied) 3	10.288
	CNS0095601	Golden flower (diploid) 1	19.333
	CNS0095602	Golden flower (diploid) 2	14.718
	CNS0095603	Golden flower (diploid) 3	14.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.270
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.551
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.372
	CNS0095610	Silvery flower (tetraploid) 1	8.084
	CNS0095611	Silvery flower (tetraploid) 2	11.352
	CNS0095612	Silvery flower (tetraploid) 3	12.814
	CNS0095613	Golden flower (tetraploid) 1	5.051
	CNS0095614	Golden flower (tetraploid) 2	8.038
	CNS0095615	Golden flower (tetraploid) 3	2.181
CRA001975	CRR073297	Stem 1	62.034
	CRR073298	Stem 2	63.867
	CRR073299	Stem 3	63.823
	CRR073300	Leaf 1	41.752
	CRR073301	Leaf 2	46.394
	CRR073302	Leaf 3	41.878
	CRR073303	Juvenile bud 1	33.412
	CRR073304	Juvenile bud 2	34.001
	CRR073305	Juvenile bud 3	37.503
	CRR073306	Third green 1	3.241
	CRR073307	Third green 2	1.417
	CRR073308	Third green 3	2.397
	CRR073309	Second white 1	1.279
	CRR073310	Second white 2	0.921
	CRR073311	Second white 3	0.479
	CRR073312	Silver flowering 1	0.283
	CRR073313	Silver flowering 2	1.149
	CRR073314	Silver flowering 3	0.959
	CRR073315	Gold flowering 1	104.163
	CRR073316	Gold flowering 2	134.474
	CRR073317	Gold flowering 3	132.222
	CRR073318	Tawny withering 1	17.679
	CRR073319	Tawny withering 2	15.589
	CRR073320	Tawny withering 3	23.117