Gene detail

Detail information of GWHGAAZE000671

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI15948.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q39033\|PLCD2_ARATH	Phosphoinositide phospholipase C 2
trEMBL	tr\|M5WAD5\|M5WAD5_PRUPE	Phosphoinositide phospholipase C {ECO:0000256\|RuleBase:RU361133}
TAIR10	AT3G08510.2	phospholipase C 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13686057	13691245	-
GWHAAZE00000001	mRNA	13686057	13691245	-
GWHAAZE00000001	exon	13690937	13691245	-
GWHAAZE00000001	exon	13690424	13690620	-
GWHAAZE00000001	exon	13689805	13689940	-
GWHAAZE00000001	exon	13689327	13689464	-
GWHAAZE00000001	exon	13688131	13688339	-
GWHAAZE00000001	exon	13687895	13688012	-
GWHAAZE00000001	exon	13687214	13687357	-
GWHAAZE00000001	exon	13687045	13687131	-
GWHAAZE00000001	exon	13686057	13686350	-
GWHAAZE00000001	CDS	13690937	13691245	-
GWHAAZE00000001	CDS	13690424	13690620	-
GWHAAZE00000001	CDS	13689805	13689940	-
GWHAAZE00000001	CDS	13689327	13689464	-
GWHAAZE00000001	CDS	13688131	13688339	-
GWHAAZE00000001	CDS	13687895	13688012	-
GWHAAZE00000001	CDS	13687214	13687357	-
GWHAAZE00000001	CDS	13687045	13687131	-
GWHAAZE00000001	CDS	13686057	13686350	-

Transcript Sequence
>GWHTAAZE000673 ATGTCGAAGCAATCTTTCAAGGTGTGCTTTTGCTTCCGGAGAATATTCAAGTTGAGGAGGGCTGAGCCTCCCTTTGATATTAGACAAGCGTTTCAGCTTTACTCGGAGAATGGTACCATGAGCATTGATAAGTTGCACCGGTTCTTGATAGAGTTCCAAGGAGAGGCCAATGCAACACAGGAGGATGCTCAGGCAATTTTCCAGAGTCTCAAGCATTTAAATATTTTCCAACGTAAGGGCCTCCACTTTGAAGGGTTCTTGCGATATCTCTTTGGCGACCATAATCTTCCCCTCCCATTGCACCTCGGGGTGCATCATGACATGAAAGCTCCATTGGCTCATTATTTCATATATACAGGCCATAACTCTTATTTAACTGGGAATCAACTCAGCAGTGATTCCAGTATCGAGCCTATCATAAAGGCACTGAGGAATGGTGTAAGAGTGATTGAATTGGATTTGTGGCCAAATTCAAATAAAGACGATATCAATGTTTGCCATGGCGGGACACTGACTAGTCCAGTTAAACTCATCAGTTGCTTGCAAGCTATTAAGATCCATGCCTTCGATTCTTCTGAGTATCCTGTTATACTAACTTTTGAAGACCACCTTACTCCAGATCTTCAAGCCAAAGTGGCTAAGATGGTCACTGAAACATTGGGAGACACACTGTTCTGCCCTCACTTGGAGTTCAAGGAGCTCCCTTCACCAGAATCATTGAAGAAGAAGATTATGATCTCAACGAAACCACCAAAAGAATACCTAGAGCCTGAGAAGAAGGGTGGAACAGATAATGTAGAGGACCACCAAGATGAAGATGTGCAGAATGTGGTTGCCGAGTATAGGCATTTGATTGCTATCCACGCTGTGAAGCTCAAAGGTAGCATAGAAAACTGGCCAAGGGATGATACCAATAAAGTTAAGCGTCTTAGCTTGAGTGAGCAAGAGCTTGAAGCTGCTTCTGCAACTCACGGGACACATTTTGTACGTTTTACCCAGCGAAATTTATTGAGGGTATACCCAAAGGGTACGCGTGTTGACTCATCCAATTACAGCCCTTTAGTCGGTTGGATGCACGGAGCTCAAATGGTTGCATTCAACATGCAGGGATATGGGAAGTACCTGTGGAGGATGCAAGGAATGTTTAGAGCCAATGGTGGGTGCGGATATGTTAAAAAACCTGACATTTTGTTGAATACTGACAAAATTTTTGATCCCGCTGAGACATTGCCCATTAAGAGATATTTGAAGGTAAAGGTTTATATGGGAGAAGGGTGGCATTCTGATTTCCACCACACGCACTTTGATCAATTCTCCCCACCCGACTTCTACACAAGGGTGGGAATAGCAGGAGTACCTGCCGATTCAATAATGCAGAGTACCGAGCCAATTGAGGATGAATGGGAACCAGTGTGGAACATGGAATTTGTTTTCCCACTTACTGTCCCTGAATTGGCCTTGCTAAGGATTGAAGTTATGGAGTATGACACCACTAAAGCGCACGATTTTGCAGGGCAAACTTGTCTACCGGTATCAGAGTTGAGAAGCGGGATCCGAATGGTTCCTCTATATAATCGCAAAGGAGAAAAGTACAAGTCCGTAAGGCTACTTATGCGCTTCAAATTATATTGA

Network for GWHGAAZE000671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09279.12	EF-hand_like	26	91	6.60E-06
PF00388.20	PI-PLC-X	108	249	2.40E-48
PF00387.20	PI-PLC-Y	302	395	1.10E-27
PF00168.31	C2	415	517	1.10E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05857	PLCD	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0007165	biological_process	signal transduction
GO:0035556	biological_process	intracellular signal transduction
GO:0004435	molecular_function	phosphatidylinositol phospholipase C activity
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.774
	SRR3591706	second leaf	1.519
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.735
	SRR3591709	Stem	12.319
	SRR3591710	White floral bud	0.532
	SRR3591711	White flower	0.657
	SRR3591712	Green floral bud	1.410
	SRR3591713	Yellow flower	0.092
SRP173429	SRR8316895	Juvenile bud stage	0.789
	SRR8316896	Juvenile bud stage	0.943
	SRR8316897	Juvenile bud stage	0.248
	SRR8316894	Third green stage	0.430
	SRR8316900	Third green stage	1.650
	SRR8316901	Third green stage	1.955
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.229
	SRR8316903	Complete white stage	0.060
	SRR8316902	Silver flowering stage	0.067
	SRR8316904	Silver flowering stage	0.040
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.086
	SRR8316907	Gold flowering stage	0.275
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.743
	SRR6706287	Light intensity 50%	0.759
	SRR6706288	Light intensity 20%	0.547
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.109
	CNS0095593	Slightly white alabastrum(diploid) 2	3.081
	CNS0095594	Slightly white alabastrum(diploid) 3	2.574
	CNS0095595	Whole white alabastrum(diploid) 2	0.978
	CNS0095596	Whole white alabastrum(diploid) 3	0.647
	CNS0095597	Whole white alabastrum(diploid) 4	1.866
	CNS0095598	Silvery flower (diploied) 1	0.347
	CNS0095599	Silvery flower (diploied) 2	0.252
	CNS0095600	Silvery flower (diploied) 3	0.168
	CNS0095601	Golden flower (diploid) 1	0.642
	CNS0095602	Golden flower (diploid) 2	0.113
	CNS0095603	Golden flower (diploid) 3	0.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.498
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.597
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.229
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.823
	CNS0095610	Silvery flower (tetraploid) 1	0.270
	CNS0095611	Silvery flower (tetraploid) 2	0.170
	CNS0095612	Silvery flower (tetraploid) 3	0.091
	CNS0095613	Golden flower (tetraploid) 1	0.056
	CNS0095614	Golden flower (tetraploid) 2	0.043
	CNS0095615	Golden flower (tetraploid) 3	0.143
CRA001975	CRR073297	Stem 1	0.996
	CRR073298	Stem 2	1.232
	CRR073299	Stem 3	0.695
	CRR073300	Leaf 1	1.834
	CRR073301	Leaf 2	1.218
	CRR073302	Leaf 3	1.234
	CRR073303	Juvenile bud 1	0.469
	CRR073304	Juvenile bud 2	0.348
	CRR073305	Juvenile bud 3	1.262
	CRR073306	Third green 1	0.362
	CRR073307	Third green 2	0.425
	CRR073308	Third green 3	0.142
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.089
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.058
	CRR073314	Silver flowering 3	0.426
	CRR073315	Gold flowering 1	0.611
	CRR073316	Gold flowering 2	0.573
	CRR073317	Gold flowering 3	0.861
	CRR073318	Tawny withering 1	7.549
	CRR073319	Tawny withering 2	3.909
	CRR073320	Tawny withering 3	8.847