Detail information of GWHGAAZE000667


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007016084.10Zinc finger family protein [Theobroma cacao]
Swissprottr|Q9LUZ4|C3H66_ARATH0Zinc finger CCCH domain-containing protein 66
trEMBLtr|A0A061GWD4|A0A061GWD4_THECC0Zinc finger family protein {ECO:0000313|EMBL:EOY33703.1}
TAIR10AT5G58620.16E-153zinc finger (CCCH-type) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1362647013628386-
GWHAAZE00000001mRNA1362647013628386-
GWHAAZE00000001exon1362789113628386-
GWHAAZE00000001exon1362715013627854-
GWHAAZE00000001exon1362647013627008-
GWHAAZE00000001CDS1362789113628386-
GWHAAZE00000001CDS1362715013627854-
GWHAAZE00000001CDS1362647013627008-
Transcript Sequence

Network for GWHGAAZE000667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_2531211.30E-08
PF18044.2zf-CCCH_42352561.30E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.171
SRR3591706second leaf19.153
SRR3591707mature leaf20.421
SRR3591708Shoot apex19.691
SRR3591709Stem33.490
SRR3591710White floral bud31.344
SRR3591711White flower61.662
SRR3591712Green floral bud17.300
SRR3591713Yellow flower63.021
SRP173429 SRR8316895Juvenile bud stage 12.526
SRR8316896Juvenile bud stage 11.233
SRR8316897Juvenile bud stage 8.771
SRR8316894Third green stage 4.434
SRR8316900Third green stage 10.685
SRR8316901Third green stage 12.989
SRR8316898Complete white stage 7.337
SRR8316899Complete white stage 27.318
SRR8316903Complete white stage 12.084
SRR8316902Silver flowering stage17.765
SRR8316904Silver flowering stage19.216
SRR8316905Silver flowering stage11.632
SRR8316906Gold flowering stage 44.199
SRR8316907Gold flowering stage 44.878
SRR8316908Gold flowering stage 48.958
SRP132670SRR6706286Control11.859
SRR6706287Light intensity 50%11.368
SRR6706288Light intensity 20%11.183
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.385
CNS0095593Slightly white alabastrum(diploid) 216.723
CNS0095594Slightly white alabastrum(diploid) 314.921
CNS0095595Whole white alabastrum(diploid) 212.241
CNS0095596Whole white alabastrum(diploid) 36.468
CNS0095597Whole white alabastrum(diploid) 410.911
CNS0095598Silvery flower (diploied) 136.912
CNS0095599Silvery flower (diploied) 229.004
CNS0095600Silvery flower (diploied) 335.251
CNS0095601Golden flower (diploid) 138.794
CNS0095602Golden flower (diploid) 257.450
CNS0095603Golden flower (diploid) 351.534
CNS0095604Slightly white alabastrum(tetraploid) 17.562
CNS0095605Slightly white alabastrum(tetraploid) 26.567
CNS0095606Slightly white alabastrum(tetraploid) 312.535
CNS0095607Whole white alabastrum(tetraploid) 16.496
CNS0095608Whole white alabastrum(tetraploid) 25.694
CNS0095609Whole white alabastrum(tetraploid) 310.973
CNS0095610Silvery flower (tetraploid) 130.877
CNS0095611Silvery flower (tetraploid) 223.980
CNS0095612Silvery flower (tetraploid) 345.878
CNS0095613Golden flower (tetraploid) 124.482
CNS0095614Golden flower (tetraploid) 235.679
CNS0095615Golden flower (tetraploid) 337.903
CRA001975CRR073297Stem 117.882
CRR073298Stem 218.430
CRR073299Stem 324.467
CRR073300Leaf 124.032
CRR073301Leaf 225.552
CRR073302Leaf 320.239
CRR073303Juvenile bud 124.716
CRR073304Juvenile bud 230.693
CRR073305Juvenile bud 334.003
CRR073306Third green 139.054
CRR073307Third green 238.565
CRR073308Third green 343.855
CRR073309Second white 159.249
CRR073310Second white 254.101
CRR073311Second white 360.862
CRR073312Silver flowering 1116.017
CRR073313Silver flowering 2115.986
CRR073314Silver flowering 3106.470
CRR073315Gold flowering 125.331
CRR073316Gold flowering 229.317
CRR073317Gold flowering 343.556
CRR073318Tawny withering 149.241
CRR073319Tawny withering 265.252
CRR073320Tawny withering 339.435