Gene detail

Detail information of GWHGAAZE000653

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007208251.1	2.0694E-125	hypothetical protein PRUPE_ppa016693mg, partial [Prunus persica]
Swissprot	tr\|Q9FZ36\|M3K2_ARATH	3E-57	Mitogen-activated protein kinase kinase kinase 2
trEMBL	tr\|M5WRK0\|M5WRK0_PRUPE	8E-126	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09450.1} (Fragment)
TAIR10	AT2G30040.1	6E-89	mitogen-activated protein kinase kinase kinase 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13369232	13370011	-
GWHAAZE00000001	mRNA	13369232	13370011	-
GWHAAZE00000001	exon	13369232	13370011	-
GWHAAZE00000001	CDS	13369232	13370011	-

Transcript Sequence
>GWHTAAZE000655 ATGGATAAAGTAAGCTGGCTCAAAGGCACCTGTATAGGCCGAGGTTCATTCGGCACCGTCAACCTCGCCGCCGACAAATCCGACGGTCGTATTTTCGCCGTCAAATCAGTGGAAATAAAATCATGTCTGTCAAACCAATTGGAAGCTTTGGAGAACGAAATTCGGATCCTAAAATCCTTATCATCGCCATACGTGGTGGAGTATACAGGCGATGACATAACATCAGAGGACTTAACGTGCAAGTTCAGAAACTTGCACGTCGAGTACTTGCCGGGTGGCACGGTGGCTGAATTGGCCGGCGCTGACCTGCACGAGACAACTGTACAGTCGTACACGTGGTGCATAGTATCGGCGTTGAGGTACGTTCACGCCAGAGGCATCGTGCATTGCGACGTCAAGGGTCGGAACGTGCTCGTGGGATCCACGCCCGGCACTGCGAAGATTGCTGATTTTGGTTCAGCTAAGGAAGTAAATTCGGCGGCGCTGCCACGTGGCAGCCCTTTATGGATGGCCCCAGAGGTCGTCCGGGGCCAATACCAGGGGCCGGAGTCTGACGTGTGGTCGTTGGGATGCACGGTAATCGAGATGGTCACCGGAAAACCGGCGTGGGATGATTCCGGCGCCGGTACACTCTTTCAAATCGGTTATTCCGATGAGTTGCCGGCGATTCCTAGTCAGCTCTCGGAAACCGGACGGGACTTTCTACAGAAGTGTTTAAGGAGAGATCCCGGCGAGAGGTGGACCTGTAATCAGCTGTTGCAGCACCCATTTGTATCATCC

Network for GWHGAAZE000653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	258	9.70E-58

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.671
	SRR3591706	second leaf	1.660
	SRR3591707	mature leaf	1.033
	SRR3591708	Shoot apex	4.725
	SRR3591709	Stem	17.092
	SRR3591710	White floral bud	25.372
	SRR3591711	White flower	53.109
	SRR3591712	Green floral bud	1.145
	SRR3591713	Yellow flower	95.159
SRP173429	SRR8316895	Juvenile bud stage	25.665
	SRR8316896	Juvenile bud stage	16.903
	SRR8316897	Juvenile bud stage	10.294
	SRR8316894	Third green stage	2.233
	SRR8316900	Third green stage	1.984
	SRR8316901	Third green stage	6.271
	SRR8316898	Complete white stage	8.360
	SRR8316899	Complete white stage	6.226
	SRR8316903	Complete white stage	13.045
	SRR8316902	Silver flowering stage	21.568
	SRR8316904	Silver flowering stage	17.620
	SRR8316905	Silver flowering stage	12.517
	SRR8316906	Gold flowering stage	59.051
	SRR8316907	Gold flowering stage	72.838
	SRR8316908	Gold flowering stage	48.530
SRP132670	SRR6706286	Control	2.612
	SRR6706287	Light intensity 50%	2.491
	SRR6706288	Light intensity 20%	1.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.145
	CNS0095593	Slightly white alabastrum(diploid) 2	17.647
	CNS0095594	Slightly white alabastrum(diploid) 3	10.122
	CNS0095595	Whole white alabastrum(diploid) 2	7.963
	CNS0095596	Whole white alabastrum(diploid) 3	0.173
	CNS0095597	Whole white alabastrum(diploid) 4	4.387
	CNS0095598	Silvery flower (diploied) 1	39.600
	CNS0095599	Silvery flower (diploied) 2	54.414
	CNS0095600	Silvery flower (diploied) 3	33.353
	CNS0095601	Golden flower (diploid) 1	63.493
	CNS0095602	Golden flower (diploid) 2	44.120
	CNS0095603	Golden flower (diploid) 3	46.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.536
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.499
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.133
	CNS0095610	Silvery flower (tetraploid) 1	19.433
	CNS0095611	Silvery flower (tetraploid) 2	10.142
	CNS0095612	Silvery flower (tetraploid) 3	63.292
	CNS0095613	Golden flower (tetraploid) 1	65.265
	CNS0095614	Golden flower (tetraploid) 2	30.835
	CNS0095615	Golden flower (tetraploid) 3	66.442
CRA001975	CRR073297	Stem 1	5.601
	CRR073298	Stem 2	7.468
	CRR073299	Stem 3	9.195
	CRR073300	Leaf 1	7.805
	CRR073301	Leaf 2	14.094
	CRR073302	Leaf 3	8.577
	CRR073303	Juvenile bud 1	8.944
	CRR073304	Juvenile bud 2	14.599
	CRR073305	Juvenile bud 3	25.322
	CRR073306	Third green 1	187.820
	CRR073307	Third green 2	164.910
	CRR073308	Third green 3	150.737
	CRR073309	Second white 1	118.667
	CRR073310	Second white 2	195.585
	CRR073311	Second white 3	145.336
	CRR073312	Silver flowering 1	145.124
	CRR073313	Silver flowering 2	124.432
	CRR073314	Silver flowering 3	177.196
	CRR073315	Gold flowering 1	2.522
	CRR073316	Gold flowering 2	6.569
	CRR073317	Gold flowering 3	3.633
	CRR073318	Tawny withering 1	3.605
	CRR073319	Tawny withering 2	20.992
	CRR073320	Tawny withering 3	3.776