Gene detail

Detail information of GWHGAAZE000642

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007208251.1	2.5171E-125	hypothetical protein PRUPE_ppa016693mg, partial [Prunus persica]
Swissprot	tr\|Q9FZ36\|M3K2_ARATH	6E-57	Mitogen-activated protein kinase kinase kinase 2
trEMBL	tr\|M5WRK0\|M5WRK0_PRUPE	9E-126	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09450.1} (Fragment)
TAIR10	AT2G30040.1	6E-89	mitogen-activated protein kinase kinase kinase 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13116199	13116978	-
GWHAAZE00000001	mRNA	13116199	13116978	-
GWHAAZE00000001	exon	13116199	13116978	-
GWHAAZE00000001	CDS	13116199	13116978	-

Transcript Sequence
>GWHTAAZE000644 ATGGATAAAGTAAGCTGGCTCAAAGGCACCTGTATAGGCCGAGGTTCATTCGGCACCGTCAACCTCGCCGCCGACAAATCCGACGGTCGTATTTTCGCCGTCAAATCAGTGGAAATAAAATCATGTCTGTCAAACCAATTGGAAGCTTTGGAGAACGAAATTCGGATCCTAAAATCCTTATCATCGCCATACGTGGTGGAGTATACAGGCGATGACATAACATCAGAGCACTTAACGTGCCAGTTCAGAAACTTGCACGTCGAGTACTTGCCGGGTGGCACGGTGGCTGAATTGGCCGGCGCTGACCTGCACGAGACAACTGTACAGTCGTACACGTGGTGCATAGTATCGGCGTTGAGGTACGTTCACGCCAGAGGCATCGTGCATTGCGACGTCAAGGGTCGGAACGTGCTCGTGGGGTCCACGCCCGGCACTGCGAAGATTGCTGATTTTGGTTCAGCTAAGGAAGTAAATTCGGCGGCGCTGCCACGTGGCAGCCCTTTATGGATGGCCCCAGAGGTCGTCCGGGGCCAATACCAGGGGCCGGAGTCTGACGTGTGGTCGTTGGGATGCACGGTAATCGAGATGGTCACCGGAAAACCGGCGTGGGATGATTCCGGCGCCGGTACACTCTTTCAAATCGGTTATTCCGATGAGTTGCCGGCGATTCCTAGTCAGCTCTCGGAAACCGGACGGGACTTTCTACAGAAGTGTTTAAGGAGAGATCCCGGCGAGAGGTGGACCTGTAATCAGCTGTTGCAGCACCCATTTGTATCATCC

Network for GWHGAAZE000642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	258	6.70E-58

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.079
	SRR3591706	second leaf	1.729
	SRR3591707	mature leaf	1.618
	SRR3591708	Shoot apex	6.261
	SRR3591709	Stem	21.551
	SRR3591710	White floral bud	33.156
	SRR3591711	White flower	70.569
	SRR3591712	Green floral bud	2.009
	SRR3591713	Yellow flower	131.933
SRP173429	SRR8316895	Juvenile bud stage	22.005
	SRR8316896	Juvenile bud stage	14.489
	SRR8316897	Juvenile bud stage	11.741
	SRR8316894	Third green stage	1.869
	SRR8316900	Third green stage	0.816
	SRR8316901	Third green stage	5.372
	SRR8316898	Complete white stage	7.315
	SRR8316899	Complete white stage	4.880
	SRR8316903	Complete white stage	14.894
	SRR8316902	Silver flowering stage	21.591
	SRR8316904	Silver flowering stage	16.717
	SRR8316905	Silver flowering stage	11.886
	SRR8316906	Gold flowering stage	54.069
	SRR8316907	Gold flowering stage	66.040
	SRR8316908	Gold flowering stage	50.070
SRP132670	SRR6706286	Control	1.942
	SRR6706287	Light intensity 50%	1.498
	SRR6706288	Light intensity 20%	0.502
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.862
	CNS0095593	Slightly white alabastrum(diploid) 2	15.649
	CNS0095594	Slightly white alabastrum(diploid) 3	8.336
	CNS0095595	Whole white alabastrum(diploid) 2	6.774
	CNS0095596	Whole white alabastrum(diploid) 3	0.156
	CNS0095597	Whole white alabastrum(diploid) 4	2.147
	CNS0095598	Silvery flower (diploied) 1	30.346
	CNS0095599	Silvery flower (diploied) 2	49.596
	CNS0095600	Silvery flower (diploied) 3	33.469
	CNS0095601	Golden flower (diploid) 1	56.138
	CNS0095602	Golden flower (diploid) 2	44.071
	CNS0095603	Golden flower (diploid) 3	44.484
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.575
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.798
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.235
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.460
	CNS0095610	Silvery flower (tetraploid) 1	31.381
	CNS0095611	Silvery flower (tetraploid) 2	16.361
	CNS0095612	Silvery flower (tetraploid) 3	105.368
	CNS0095613	Golden flower (tetraploid) 1	110.166
	CNS0095614	Golden flower (tetraploid) 2	49.108
	CNS0095615	Golden flower (tetraploid) 3	114.396
CRA001975	CRR073297	Stem 1	4.010
	CRR073298	Stem 2	5.593
	CRR073299	Stem 3	4.814
	CRR073300	Leaf 1	6.723
	CRR073301	Leaf 2	9.990
	CRR073302	Leaf 3	7.266
	CRR073303	Juvenile bud 1	8.134
	CRR073304	Juvenile bud 2	11.183
	CRR073305	Juvenile bud 3	20.937
	CRR073306	Third green 1	172.673
	CRR073307	Third green 2	144.664
	CRR073308	Third green 3	132.595
	CRR073309	Second white 1	107.348
	CRR073310	Second white 2	180.481
	CRR073311	Second white 3	130.487
	CRR073312	Silver flowering 1	139.631
	CRR073313	Silver flowering 2	109.952
	CRR073314	Silver flowering 3	150.089
	CRR073315	Gold flowering 1	2.534
	CRR073316	Gold flowering 2	3.958
	CRR073317	Gold flowering 3	1.777
	CRR073318	Tawny withering 1	1.971
	CRR073319	Tawny withering 2	15.447
	CRR073320	Tawny withering 3	1.808