Gene detail

Detail information of GWHGAAZE000633

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09225.1	6.8466E-133	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q5N9J9\|PHYK2_ORYSJ	2E-115	Probable phytol kinase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A068UL41\|A0A068UL41_COFCA	3E-133	Coffea canephora DH200=94 genomic scaffold, scaffold_36 {ECO:0000313\|EMBL:CDP09225.1}
TAIR10	AT5G58560.1	1E-76	Phosphatidate cytidylyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	13009893	13014787	+
GWHAAZE00000001	mRNA	13009893	13014787	+
GWHAAZE00000001	exon	13009893	13010114	+
GWHAAZE00000001	exon	13011874	13011941	+
GWHAAZE00000001	exon	13012024	13012155	+
GWHAAZE00000001	exon	13013326	13013441	+
GWHAAZE00000001	exon	13013589	13013703	+
GWHAAZE00000001	exon	13014476	13014787	+
GWHAAZE00000001	five_prime_UTR	13009893	13009997	+
GWHAAZE00000001	CDS	13009998	13010114	+
GWHAAZE00000001	CDS	13011874	13011941	+
GWHAAZE00000001	CDS	13012024	13012155	+
GWHAAZE00000001	CDS	13013326	13013441	+
GWHAAZE00000001	CDS	13013589	13013703	+
GWHAAZE00000001	CDS	13014476	13014653	+
GWHAAZE00000001	three_prime_UTR	13014654	13014787	+

Transcript Sequence
>GWHTAAZE000635 TACTAGACTAGATGATACTCACCAGTCACCATTATTAATTTCTAAAGCTTCGTATTCCGTCAGCTAACTCGCCAGAAACTGACTTTTATACTCTCCGCCGCTTCGATGCTACGGGAGTATGCGGTCGTCGGGGATATTTTTGCGGCAGCGTTGTCGTTGGGAATCGCTCTGTTCGTACTTCAAATTTGGGCAGAAACAGCCAAGCGAGGGGTCTTCGATCAGAAACTGAACAGGAAGCTTGTGCATATAAGCTTTGGGCTGGTTTTCATGTTATGCTGGCCAATATTCAGTTCTGGTCATCGTGGAGCAATTCTGGCATCTCTTATTCCTGGCATCTTTATAGTGAAAATGCTTCTTTTGGGACTTGGAATATTGAAAGATGAGGCCACTGTCAAGTCAATGAGCAGATATGGAGACTACAGGGAACTTCTCAAGGGACCGCTTTACTATGCTTGCACAATCACTTTTGCTTGTGCAATCTATTGGAGAACTTCCCCAGTTGCAATTTCCTCAATTTGCAACCTCTGTGCTGGAGACGGTGTAGCTGACATTGTAGGAAGGCGGTTCGGAAGCCAGAAGATACCTTACAACAAAAACAAATCCATTGCTGGTAGTGCCGCAATGGCAATTGCTGGTTTCGTTGCATCTATTGGGTATATGCATTACTTCTCCATGTTCGGGTACATTGACGAAAGTTGGGGAATGGTCTCACGTTTCTTGGTTCTGTCTCTTGTAGCCGTATTGGTGGAATCTCACCCTCTAAGCACCAAGTTAGATGACAACCTCACAGTTCCTCTTTCTGCAGTGTTGGTTGGAAGCTTTGTATTCTAATATTAGGTAACTTGGTTGGACTGGCCATTGTTGCACTAATGATGTGTTTGCTTAATGGTTAGTGTTGGTTGGATTTGTTTAGGAATCTTCTACTCCCTGTCTCAATAAGAGAATTTGTTGTCCCTTGAAATTTT

Network for GWHGAAZE000633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15892	FOLK	Biosynthesis of secondary metabolites	map01110
K15892	FOLK	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.992
	SRR3591706	second leaf	5.852
	SRR3591707	mature leaf	7.017
	SRR3591708	Shoot apex	12.145
	SRR3591709	Stem	6.349
	SRR3591710	White floral bud	7.757
	SRR3591711	White flower	6.130
	SRR3591712	Green floral bud	11.301
	SRR3591713	Yellow flower	5.387
SRP173429	SRR8316895	Juvenile bud stage	4.855
	SRR8316896	Juvenile bud stage	3.545
	SRR8316897	Juvenile bud stage	2.658
	SRR8316894	Third green stage	2.202
	SRR8316900	Third green stage	5.290
	SRR8316901	Third green stage	5.051
	SRR8316898	Complete white stage	0.994
	SRR8316899	Complete white stage	4.639
	SRR8316903	Complete white stage	1.467
	SRR8316902	Silver flowering stage	0.111
	SRR8316904	Silver flowering stage	0.973
	SRR8316905	Silver flowering stage	0.194
	SRR8316906	Gold flowering stage	1.372
	SRR8316907	Gold flowering stage	2.031
	SRR8316908	Gold flowering stage	3.370
SRP132670	SRR6706286	Control	5.527
	SRR6706287	Light intensity 50%	4.876
	SRR6706288	Light intensity 20%	5.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.473
	CNS0095593	Slightly white alabastrum(diploid) 2	6.220
	CNS0095594	Slightly white alabastrum(diploid) 3	5.189
	CNS0095595	Whole white alabastrum(diploid) 2	4.248
	CNS0095596	Whole white alabastrum(diploid) 3	3.534
	CNS0095597	Whole white alabastrum(diploid) 4	4.061
	CNS0095598	Silvery flower (diploied) 1	4.165
	CNS0095599	Silvery flower (diploied) 2	4.089
	CNS0095600	Silvery flower (diploied) 3	2.828
	CNS0095601	Golden flower (diploid) 1	8.413
	CNS0095602	Golden flower (diploid) 2	4.653
	CNS0095603	Golden flower (diploid) 3	2.899
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.245
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.667
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.240
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.158
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.128
	CNS0095610	Silvery flower (tetraploid) 1	7.163
	CNS0095611	Silvery flower (tetraploid) 2	8.776
	CNS0095612	Silvery flower (tetraploid) 3	4.656
	CNS0095613	Golden flower (tetraploid) 1	7.200
	CNS0095614	Golden flower (tetraploid) 2	7.491
	CNS0095615	Golden flower (tetraploid) 3	3.002
CRA001975	CRR073297	Stem 1	6.101
	CRR073298	Stem 2	5.380
	CRR073299	Stem 3	4.414
	CRR073300	Leaf 1	4.426
	CRR073301	Leaf 2	4.088
	CRR073302	Leaf 3	4.458
	CRR073303	Juvenile bud 1	2.951
	CRR073304	Juvenile bud 2	0.657
	CRR073305	Juvenile bud 3	3.666
	CRR073306	Third green 1	0.293
	CRR073307	Third green 2	0.234
	CRR073308	Third green 3	0.094
	CRR073309	Second white 1	0.359
	CRR073310	Second white 2	0.231
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.324
	CRR073314	Silver flowering 3	0.714
	CRR073315	Gold flowering 1	4.939
	CRR073316	Gold flowering 2	4.329
	CRR073317	Gold flowering 3	4.935
	CRR073318	Tawny withering 1	6.530
	CRR073319	Tawny withering 2	6.715
	CRR073320	Tawny withering 3	4.914