Gene detail

Detail information of GWHGAAZE000627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP45777.1	0	hypothetical protein JCGZ_17384 [Jatropha curcas]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1E-36	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A067LBM3\|A0A067LBM3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP45777.1}
TAIR10	AT5G58520.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12877836	12881585	+
GWHAAZE00000001	mRNA	12877836	12881585	+
GWHAAZE00000001	exon	12877836	12878245	+
GWHAAZE00000001	exon	12878537	12879605	+
GWHAAZE00000001	exon	12881289	12881585	+
GWHAAZE00000001	five_prime_UTR	12877836	12877850	+
GWHAAZE00000001	CDS	12877851	12878245	+
GWHAAZE00000001	CDS	12878537	12879605	+
GWHAAZE00000001	CDS	12881289	12881585	+

Transcript Sequence
>GWHTAAZE000629 CCAATAACCATAACCATGGCTGCTGCACTAGAGTGCTGGTCCAGCCGCGCCAGCACCGACGAGGACATGGTGGAGCAAGTCCTGATGCGAACCCAGGACAGATCCGAGGCCGCACCCGAAAACTCCTCCTCATCTGCTGCTGCCCCTGCAACTGCCACCTGCGCATTCAAGGAGTCATCTGCGATGCAGAAGCGGCTGCAGAAGCTGAGCCGGAACGTGTCCGAGGCCATTGCCTCTTTCAAAAACTCACTTAATATTGACGGAGCCCAGCCGCCCGCCCGGATCGACAGTTGCAGGAAGCATGTTTGGGGGAGTGTTGTCAGGAACTTGACGCAGCTCTATCCTGGCAGTCAGCTTCCTGAGAAGCTTGTCTCCAATATTCGCAAGCATTATGATTCTTTACCCCTCAGTTACGCACAAGCAGGATTTGAAATGAAAGATGTGTTTCTACACATCAAATTGATAGAGCAGGCTTCTGCAGAAGAACACTCGTCTATTTTGATACAAGAGGTATCTGAAGATGAAGTTCAGGGGTCTGTTTTCAAGCTTACATTTGCTTGTAACTCCTCAATTTCGTGGCCAGCCATGTCGGGTGCACTCGACAACGCTTCGATTTGTTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGGTTCACGTTGGGGATTGTTCTTCTATTGGTTCAATCTGGGCAAGATAAGATGTTCAAAACCCGGATCGAGAATGCACTAAAATCGTCTTTGAAGAAACCGAAACCTACTAGTATGAAGCTCTCGTTCGGGCTTTGTGGGTGTCAAGAAGAGAACACTAGGGGGAGAGAGCTTGGAGAGATTGAAGATGATTGCAATGAACAAAATTATAATACTAAGGTTCAAGTTCAGATTCAGTTGCCATTGCCCACTTCATCAATTGTTGTTTCTGTTGATGAATGGCAAACTGTGCAAGTGGGTGGGGATGAGATTGGGAAGTGGTTATTGAATCCCGATAATCTCGAGTTCATCGATCAAATTGGGCCTAATACATTCAAGGGAGTTTACAAGGGGAAACGAGTTGGAATCGAGAAGCTCAAAGGGTGTGATAAGGGAAATTCTTACGAGTTTGAGCTAAGGAGAGATATGTTGGAGTTGATGACTTGTGGGCACAGGAATATTTTGCAATTTTACGGAGTTTGCATTGACGAAAATCACGGGTTGTGTGTGTTGACAAAGTTGATGGAGGGTGGATCGGTGAATGATTATATGCTGAAGAACAAAAAAAATCTTCAAACAAAGGAAATTACAAGGATTGCCACGGATGTAGCAGAGGGGATAAAGTTCATGAATGACCATGGTGTTGCTTATAGAGATCTGAATACACAAAGGATCTTGTTGGATAGACATGGAAATGCTTGCTTGGGAGACATGGGTATAGTGGCTGCTTGCAAGAGCGGTGGCGAGGCTATGGAGTATGAAACTGATGGTTATCGGTGGCTTGCTCCTGAGATCATTGCAGGTGACCCTGAAACTGTAACAGAGACATGGATGAGTAATGTATATAGTTTTGGTATGCTAGTGTGGGAGATGGTGACGGGTGAGGCAGCTTACTCTGCATTTTCACCTGTTCAAGCCGCTGTTGGTATAGCTGCTTGTGGGCTAAGACCCGAGATCCCCAAAGACTGCTCACAAACTTTGAGGTCTCTCATGATCAAGTGCTGGAACAATTCCCCCTCGGATCGCCCTCAATTCTCTGAAATTATATCAATATTAACACGCCAAGGCAACAATGTCAAAAAACAGTAA

Network for GWHGAAZE000627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	358	576	1.20E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-7

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.148
	SRR3591706	second leaf	6.749
	SRR3591707	mature leaf	2.903
	SRR3591708	Shoot apex	9.456
	SRR3591709	Stem	11.759
	SRR3591710	White floral bud	5.842
	SRR3591711	White flower	1.587
	SRR3591712	Green floral bud	15.628
	SRR3591713	Yellow flower	0.169
SRP173429	SRR8316895	Juvenile bud stage	4.739
	SRR8316896	Juvenile bud stage	7.600
	SRR8316897	Juvenile bud stage	3.155
	SRR8316894	Third green stage	3.398
	SRR8316900	Third green stage	8.015
	SRR8316901	Third green stage	12.948
	SRR8316898	Complete white stage	1.287
	SRR8316899	Complete white stage	25.445
	SRR8316903	Complete white stage	2.043
	SRR8316902	Silver flowering stage	0.027
	SRR8316904	Silver flowering stage	0.100
	SRR8316905	Silver flowering stage	0.039
	SRR8316906	Gold flowering stage	0.165
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.115
SRP132670	SRR6706286	Control	7.683
	SRR6706287	Light intensity 50%	8.607
	SRR6706288	Light intensity 20%	9.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.553
	CNS0095593	Slightly white alabastrum(diploid) 2	4.468
	CNS0095594	Slightly white alabastrum(diploid) 3	6.119
	CNS0095595	Whole white alabastrum(diploid) 2	3.080
	CNS0095596	Whole white alabastrum(diploid) 3	3.435
	CNS0095597	Whole white alabastrum(diploid) 4	2.761
	CNS0095598	Silvery flower (diploied) 1	2.876
	CNS0095599	Silvery flower (diploied) 2	4.000
	CNS0095600	Silvery flower (diploied) 3	1.110
	CNS0095601	Golden flower (diploid) 1	2.200
	CNS0095602	Golden flower (diploid) 2	1.629
	CNS0095603	Golden flower (diploid) 3	1.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.032
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.806
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.394
	CNS0095610	Silvery flower (tetraploid) 1	0.262
	CNS0095611	Silvery flower (tetraploid) 2	0.941
	CNS0095612	Silvery flower (tetraploid) 3	0.579
	CNS0095613	Golden flower (tetraploid) 1	0.049
	CNS0095614	Golden flower (tetraploid) 2	0.265
	CNS0095615	Golden flower (tetraploid) 3	0.023
CRA001975	CRR073297	Stem 1	13.718
	CRR073298	Stem 2	16.099
	CRR073299	Stem 3	13.861
	CRR073300	Leaf 1	24.228
	CRR073301	Leaf 2	16.701
	CRR073302	Leaf 3	19.023
	CRR073303	Juvenile bud 1	17.149
	CRR073304	Juvenile bud 2	17.170
	CRR073305	Juvenile bud 3	19.644
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.061
	CRR073308	Third green 3	0.413
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.008
	CRR073311	Second white 3	0.050
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.127
	CRR073314	Silver flowering 3	0.078
	CRR073315	Gold flowering 1	2.409
	CRR073316	Gold flowering 2	3.871
	CRR073317	Gold flowering 3	4.400
	CRR073318	Tawny withering 1	10.885
	CRR073319	Tawny withering 2	7.402
	CRR073320	Tawny withering 3	7.983