Gene detail

Detail information of GWHGAAZE000608

Functional Annotation

Database	Orthologs	Annotation
Nr	EYU45998.1	hypothetical protein MIMGU_mgv1a005428mg [Erythranthe guttata]
Swissprot	tr\|Q9SR86\|AGT23_ARATH	Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBL	tr\|A0A022S296\|A0A022S296_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU45998.1}
TAIR10	AT3G08860.1	PYRIMIDINE 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12482575	12489090	+
GWHAAZE00000001	mRNA	12482575	12489090	+
GWHAAZE00000001	exon	12482575	12482790	+
GWHAAZE00000001	exon	12484397	12484627	+
GWHAAZE00000001	exon	12485297	12485467	+
GWHAAZE00000001	exon	12485783	12485926	+
GWHAAZE00000001	exon	12486696	12486875	+
GWHAAZE00000001	exon	12487619	12487844	+
GWHAAZE00000001	exon	12488591	12488704	+
GWHAAZE00000001	exon	12488993	12489090	+
GWHAAZE00000001	CDS	12482575	12482790	+
GWHAAZE00000001	CDS	12484397	12484627	+
GWHAAZE00000001	CDS	12485297	12485467	+
GWHAAZE00000001	CDS	12485783	12485926	+
GWHAAZE00000001	CDS	12486696	12486875	+
GWHAAZE00000001	CDS	12487619	12487844	+
GWHAAZE00000001	CDS	12488591	12488704	+
GWHAAZE00000001	CDS	12488993	12489090	+

Transcript Sequence
>GWHTAAZE000610 ATGCAGAGATTATTCGCAAGGGCAGTTTCGTCAAGAGATTTGCAGGGGAAGTTCCGAAACTTGTCAAGGCCAGCACATTCAGATGAAGTTATTGTTCCTAAAATGCCGCCATTCGACTATACTCCGCCTCCGTATACGGGACCACCGGCGGAGGAGATACTGAAGAAGAGGCAACACTACCTCAGCCCTTCCATTTTCCATTTGTACAAAAAACCTTTAAATTTGGTAGATGGAAAGATGCAGTACTTGTTTGATGAAAGTGGGAGACGATACCTTGACGCATTTGGAGGGATTGCAACAGTTAGCTGTGGGCACTGCCACCCTGATGTTGTTGAAGCAATTGTTAACCAAACGAAGAAGTTACAACATTCAACCGTGCTATATTTAAATCACTCTATTGCCGACTTTGCTGAGGCACTTGCATCCAAGTTTCCCGGTGATCTCAAGGTTGTATTCTTCACGAATTCTGGGACGGAAGCAAATGAGCTGGCATTGATGATTGCTCGGTTGTATACTGGTTGCCAAGATATTATTTCAGTTAGGAACGGATATCACGGAAATGCATCTGCAACAATGGGTGCTACGGCACAATCTACCTACAAGTTCAATACTGTACAAACTGGAGTTCTTCATGCCCTGAACCCAGACCAATACCGAGGTGTGTTTGGTTCGGATGGAGCCAAATATGCAAGAGATGTTGATGACCTCCTTTCCTTTGGATGTTGTGGCCGTGTTGCTGGTTTTATTGCAGAAGCCATTCAGGGAGTAGGTGGAATTTATGAGTTGGCTCCTGGTTATCTGCCTGCTGTCTATAGGAGCATTAGAAAGGCAGGAGGCCTTTGTATAGCTGATGAGGTCCAGTCTGGTTTTGCACGCACTGGTAGCCATTTTTGGGGTTTCGAGTCCCATGGTGTTGTGCCCGATATTGTCACTATGGCTAAGGGCATAGGAAATGGCATTCCCCTTGGTGCAGTAGTAACCACTCGAGAGATTGCAGAAGTGTTAACAGCTGCTAATTATTTCAATACTTTTGGCGGGAGCCCTGTGTGTACTGCTGCTGGTTCCGCTGTTCTCAGAGTGATAGAGAAAGATAAGCTTCAGGAGAATGCATTTACCGTTGGATCGTATCTCAAAGAGCGCCTTTTGGCTCTTAAGGAAAAATATGAACTAATTGGGGACGTGAGAGGAAGAGGTCTGATGCTTGGAGTTGAACTTGTAACCGATCACGAGTTAAAAACTCCTGCTAAGGCTGAAATTAATCATCTTATGGACCAAATAAAAGAAATGGGCGTTTTGATAGGAAAAGGTGGGTTTTATGGAAACGTATTCAGAATCACTCCTCCTCTTTGCTTCTCAAAAGAAGATGCTGGTTCGTTCTAG

Network for GWHGAAZE000608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00202.22	Aminotran_3	74	456	4.50E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00827	AGXT2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Alanine, aspartate and glutamate metabolism	map00250
		Glycine, serine and threonine metabolism	map00260
		Cysteine and methionine metabolism	map00270
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0008483	molecular_function	transaminase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.155
	SRR3591707	mature leaf	0.119
	SRR3591708	Shoot apex	0.121
	SRR3591709	Stem	0.976
	SRR3591710	White floral bud	137.466
	SRR3591711	White flower	8.352
	SRR3591712	Green floral bud	66.196
	SRR3591713	Yellow flower	4.841
SRP173429	SRR8316895	Juvenile bud stage	2.327
	SRR8316896	Juvenile bud stage	3.536
	SRR8316897	Juvenile bud stage	3.918
	SRR8316894	Third green stage	1.615
	SRR8316900	Third green stage	39.656
	SRR8316901	Third green stage	30.552
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.135
	SRR8316903	Complete white stage	0.366
	SRR8316902	Silver flowering stage	1.502
	SRR8316904	Silver flowering stage	3.801
	SRR8316905	Silver flowering stage	0.685
	SRR8316906	Gold flowering stage	0.234
	SRR8316907	Gold flowering stage	0.109
	SRR8316908	Gold flowering stage	0.192
SRP132670	SRR6706286	Control	26.093
	SRR6706287	Light intensity 50%	28.877
	SRR6706288	Light intensity 20%	26.732
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.090
	CNS0095593	Slightly white alabastrum(diploid) 2	9.495
	CNS0095594	Slightly white alabastrum(diploid) 3	12.103
	CNS0095595	Whole white alabastrum(diploid) 2	109.825
	CNS0095596	Whole white alabastrum(diploid) 3	117.064
	CNS0095597	Whole white alabastrum(diploid) 4	180.506
	CNS0095598	Silvery flower (diploied) 1	5.891
	CNS0095599	Silvery flower (diploied) 2	25.981
	CNS0095600	Silvery flower (diploied) 3	2.767
	CNS0095601	Golden flower (diploid) 1	8.087
	CNS0095602	Golden flower (diploid) 2	2.775
	CNS0095603	Golden flower (diploid) 3	2.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.243
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.800
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	135.480
	CNS0095608	Whole white alabastrum(tetraploid) 2	165.661
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.449
	CNS0095610	Silvery flower (tetraploid) 1	3.598
	CNS0095611	Silvery flower (tetraploid) 2	11.609
	CNS0095612	Silvery flower (tetraploid) 3	38.509
	CNS0095613	Golden flower (tetraploid) 1	4.521
	CNS0095614	Golden flower (tetraploid) 2	1.204
	CNS0095615	Golden flower (tetraploid) 3	14.698
CRA001975	CRR073297	Stem 1	5.685
	CRR073298	Stem 2	4.269
	CRR073299	Stem 3	1.989
	CRR073300	Leaf 1	52.343
	CRR073301	Leaf 2	27.209
	CRR073302	Leaf 3	10.187
	CRR073303	Juvenile bud 1	47.948
	CRR073304	Juvenile bud 2	32.642
	CRR073305	Juvenile bud 3	3.774
	CRR073306	Third green 1	20.685
	CRR073307	Third green 2	18.627
	CRR073308	Third green 3	22.726
	CRR073309	Second white 1	1.043
	CRR073310	Second white 2	3.697
	CRR073311	Second white 3	5.637
	CRR073312	Silver flowering 1	19.533
	CRR073313	Silver flowering 2	21.949
	CRR073314	Silver flowering 3	14.659
	CRR073315	Gold flowering 1	17.166
	CRR073316	Gold flowering 2	7.860
	CRR073317	Gold flowering 3	1.355
	CRR073318	Tawny withering 1	25.739
	CRR073319	Tawny withering 2	24.149
	CRR073320	Tawny withering 3	22.646