Gene detail

Detail information of GWHGAAZE000596

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268300.1	0	PREDICTED: probable serine/threonine-protein kinase WNK4 [Vitis vinifera]
Swissprot	tr\|Q9LVL5\|WNK4_ARATH	0	Probable serine/threonine-protein kinase WNK4
trEMBL	tr\|D7SJK3\|D7SJK3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15829.3}
TAIR10	AT3G51630.2	8E-152	with no lysine (K) kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	12167416	12171485	+
GWHAAZE00000001	mRNA	12167416	12171485	+
GWHAAZE00000001	exon	12167416	12167517	+
GWHAAZE00000001	exon	12168229	12168494	+
GWHAAZE00000001	exon	12169202	12169425	+
GWHAAZE00000001	exon	12169558	12169715	+
GWHAAZE00000001	exon	12169797	12170109	+
GWHAAZE00000001	exon	12170450	12170785	+
GWHAAZE00000001	exon	12171040	12171485	+
GWHAAZE00000001	CDS	12167416	12167517	+
GWHAAZE00000001	CDS	12168229	12168494	+
GWHAAZE00000001	CDS	12169202	12169425	+
GWHAAZE00000001	CDS	12169558	12169715	+
GWHAAZE00000001	CDS	12169797	12170109	+
GWHAAZE00000001	CDS	12170450	12170785	+
GWHAAZE00000001	CDS	12171040	12171485	+

Transcript Sequence
>GWHTAAZE000598 ATGGAGAAGTTTAAGCGACAACTAAAAGAGCAATCGGATGAATTAGAAGGAAAGGATAGTTATGGATATGTTGAGATTGATCCAACTGGTCGGTATGGTCGTTTGGACGAAGTTCTAGGAAAAGGGGCAATGAAAACCGTGTACAAGGCAATGGATTTAATCCTTGGAATTGAAGTGGCATGGAGTCAGGTAAAGCTTAATGACTTGATGCAGTCACCAGAGGATCTACAGAGACTTTACAAAGAGGTTCACCTACTAAGAATCCTAAATCACGATTCCATAGTCCGCATCTACGCCTCTTGGATTGATGATGACCGAAGAACTTTCAATTTCATCACTGAAATGTTCACTTCTGGTACCCTTGGAGAATACAAGAAGAAATATAAGAGAATCGACAATGGGGCCACCAAGATTTGGATCCGCCAGATCCTAGAATGCATTGTTTTTCTACACAGTCATGATCCTCCAGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATTCGGGACAAGTGAAGATTGGTGATTTTGGGTTGGCTGCAATTCTCCGTAACTCCCACACAGCCCACAGTGTCATAGGCACGCCCGAGTTTATGGCACCAGAAATTTACGAAGAGAGTTATAATGAATTGGTTGATGTATATTCGTTTGGCATGTGTGTTCTAGAGATGCTTACTTGTGAATATCCGTACAGCGAGTGCACCAATCCAGCACAAATATACAAGAAAGTTACATCGCATAAGTTGCCAATGGCATTCTACAAAGTTAAAGACGTAGAGGCGCAGCGCTTTATTGGAAAATGCTTGGTAGATGCTTCAAAGAGGCCATCAGCAAAGGAACTACTCCTCGATCCATTTCTTAGAACAAATGAAGATAAACTGTTGTCTGTAACTATGGGTCGATATCAAAAGCCGTTTTTGAATGATGAGATAGGATTTGAGGAACGTAGGTTGAATGAGAATCCGCCAAGGACCAACATGAGTATAACAGGGATATTGAATCCTGAAGGTGATACCATCTTTCTTAAAGTGCAGGTTGCTGATGAAGAAGGTCCTTTGAGGAATATTGACTTTCCTTTTGACATTACAAAAGATACCCCTGTCGAAGTTGCAACTGAAATGGTGGAGGAGTTAGGAATAAAAGACTGGGAACCATTTGAAGTTGCAGATATGATTGAAGCAGAAATCTCTGCTTTGGTACCACACTGGAAGAAACGGACTTCCCCTAACTCGGATGAATTGCATATATTTGATGATCAAAAAGACTATGCTGATCACCACTATCCATTTCCCCCCTCCTCTTGTTCATCATCGGACGTGTCCCTTTCTGGTTTAATCGCATCCCATTGTATGGACGAAAGGACTTGTGTCTCTAGTTTGCTCCAAGATGACTTGTTTGATGACACCAGCTCTCAAAGCTCTCTACTCTCAGGAAAATATTCGTACTCAAATATTTACTACTCCGACCATGAGCAAGATTATGATTTAAGCCCCACAAAAATAGTAACACGCAACTCTACAAGGTTCTGTAATGGAGAAAATTCAAGCACCGCTAATTCCATGGCCGAAAATTGCAATAAAGTTAAATACGCAATGGACAGACGCATATTGACAAGGAACATGTCCCTAGTGGACAAGCGTAGCCAGTTGCACCACCAGTCAATCGTGGAGGAGGCGAACAAGAGACGGTTGTTTAAGACAGTTGGTGCGGTGGAAAATATCGGGTTCCAGCCACCTTGTGGGGTCTCCAGTAAGGTGTCGCAGCGGGTGAGTGGTGGTGCTTCTCTAGTGAAGACTAGAGATCATGGTAAGAGGGTTGAACATAAAGGATGA

Network for GWHGAAZE000596

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	36	291	7.20E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.000
	SRR3591706	second leaf	0.814
	SRR3591707	mature leaf	9.197
	SRR3591708	Shoot apex	1.090
	SRR3591709	Stem	27.402
	SRR3591710	White floral bud	3.875
	SRR3591711	White flower	5.902
	SRR3591712	Green floral bud	0.432
	SRR3591713	Yellow flower	0.820
SRP173429	SRR8316895	Juvenile bud stage	0.596
	SRR8316896	Juvenile bud stage	0.530
	SRR8316897	Juvenile bud stage	0.168
	SRR8316894	Third green stage	0.319
	SRR8316900	Third green stage	0.707
	SRR8316901	Third green stage	0.466
	SRR8316898	Complete white stage	0.544
	SRR8316899	Complete white stage	4.363
	SRR8316903	Complete white stage	1.912
	SRR8316902	Silver flowering stage	0.020
	SRR8316904	Silver flowering stage	0.339
	SRR8316905	Silver flowering stage	0.052
	SRR8316906	Gold flowering stage	0.501
	SRR8316907	Gold flowering stage	0.471
	SRR8316908	Gold flowering stage	0.513
SRP132670	SRR6706286	Control	0.599
	SRR6706287	Light intensity 50%	0.517
	SRR6706288	Light intensity 20%	0.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.147
	CNS0095593	Slightly white alabastrum(diploid) 2	0.411
	CNS0095594	Slightly white alabastrum(diploid) 3	0.650
	CNS0095595	Whole white alabastrum(diploid) 2	1.272
	CNS0095596	Whole white alabastrum(diploid) 3	0.018
	CNS0095597	Whole white alabastrum(diploid) 4	0.784
	CNS0095598	Silvery flower (diploied) 1	7.522
	CNS0095599	Silvery flower (diploied) 2	6.617
	CNS0095600	Silvery flower (diploied) 3	3.228
	CNS0095601	Golden flower (diploid) 1	6.760
	CNS0095602	Golden flower (diploid) 2	5.866
	CNS0095603	Golden flower (diploid) 3	6.179
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.473
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.787
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.007
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.776
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.157
	CNS0095610	Silvery flower (tetraploid) 1	2.451
	CNS0095611	Silvery flower (tetraploid) 2	3.163
	CNS0095612	Silvery flower (tetraploid) 3	1.124
	CNS0095613	Golden flower (tetraploid) 1	1.870
	CNS0095614	Golden flower (tetraploid) 2	3.015
	CNS0095615	Golden flower (tetraploid) 3	0.406
CRA001975	CRR073297	Stem 1	0.179
	CRR073298	Stem 2	0.164
	CRR073299	Stem 3	0.280
	CRR073300	Leaf 1	0.110
	CRR073301	Leaf 2	0.514
	CRR073302	Leaf 3	0.228
	CRR073303	Juvenile bud 1	0.400
	CRR073304	Juvenile bud 2	0.281
	CRR073305	Juvenile bud 3	0.622
	CRR073306	Third green 1	0.170
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.477
	CRR073309	Second white 1	0.110
	CRR073310	Second white 2	0.683
	CRR073311	Second white 3	0.002
	CRR073312	Silver flowering 1	0.151
	CRR073313	Silver flowering 2	0.021
	CRR073314	Silver flowering 3	0.673
	CRR073315	Gold flowering 1	4.391
	CRR073316	Gold flowering 2	6.531
	CRR073317	Gold flowering 3	3.215
	CRR073318	Tawny withering 1	19.303
	CRR073319	Tawny withering 2	19.562
	CRR073320	Tawny withering 3	19.278