Detail information of GWHGAAZE000565


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010253045.10PREDICTED: ATP-dependent RNA helicase DBP2-like [Nelumbo nucifera]
Swissprottr|Q0DB53|RH52A_ORYSJ4E-111DEAD-box ATP-dependent RNA helicase 52A
trEMBLtr|M5W7C8|M5W7C8_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ09647.1}
TAIR10AT5G63120.21E-93P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1133932411349838-
GWHAAZE00000001mRNA1133932411349838-
GWHAAZE00000001exon1133932411339500-
GWHAAZE00000001exon1134028011340354-
GWHAAZE00000001exon1134047611340565-
GWHAAZE00000001exon1134076111340835-
GWHAAZE00000001exon1134140011341531-
GWHAAZE00000001exon1134378711343882-
GWHAAZE00000001exon1134571611345814-
GWHAAZE00000001exon1134607011346150-
GWHAAZE00000001exon1134675611346917-
GWHAAZE00000001exon1134718911347263-
GWHAAZE00000001exon1134812311348218-
GWHAAZE00000001exon1134835011348514-
GWHAAZE00000001exon1134863511348727-
GWHAAZE00000001exon1134953311349838-
GWHAAZE00000001CDS1134953311349838-
GWHAAZE00000001CDS1134863511348727-
GWHAAZE00000001CDS1134835011348514-
GWHAAZE00000001CDS1134812311348218-
GWHAAZE00000001CDS1134718911347263-
GWHAAZE00000001CDS1134675611346917-
GWHAAZE00000001CDS1134607011346150-
GWHAAZE00000001CDS1134571611345814-
GWHAAZE00000001CDS1134378711343882-
GWHAAZE00000001CDS1134140011341531-
GWHAAZE00000001CDS1134076111340835-
GWHAAZE00000001CDS1134047611340565-
GWHAAZE00000001CDS1134028011340354-
GWHAAZE00000001CDS1133932411339500-
Transcript Sequence

Network for GWHGAAZE000565

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD1523233.50E-53
PF00271.32Helicase_C3614766.10E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12823DDX5, DBP2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.995
SRR3591706second leaf34.763
SRR3591707mature leaf23.702
SRR3591708Shoot apex49.224
SRR3591709Stem35.859
SRR3591710White floral bud21.587
SRR3591711White flower23.573
SRR3591712Green floral bud26.778
SRR3591713Yellow flower16.927
SRP173429 SRR8316895Juvenile bud stage 22.614
SRR8316896Juvenile bud stage 30.492
SRR8316897Juvenile bud stage 12.455
SRR8316894Third green stage 10.834
SRR8316900Third green stage 26.107
SRR8316901Third green stage 21.776
SRR8316898Complete white stage 6.869
SRR8316899Complete white stage 27.756
SRR8316903Complete white stage 12.994
SRR8316902Silver flowering stage5.175
SRR8316904Silver flowering stage7.950
SRR8316905Silver flowering stage3.963
SRR8316906Gold flowering stage 12.685
SRR8316907Gold flowering stage 11.180
SRR8316908Gold flowering stage 13.065
SRP132670SRR6706286Control24.257
SRR6706287Light intensity 50%25.292
SRR6706288Light intensity 20%26.797
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.553
CNS0095593Slightly white alabastrum(diploid) 218.309
CNS0095594Slightly white alabastrum(diploid) 317.250
CNS0095595Whole white alabastrum(diploid) 216.567
CNS0095596Whole white alabastrum(diploid) 310.618
CNS0095597Whole white alabastrum(diploid) 413.124
CNS0095598Silvery flower (diploied) 127.734
CNS0095599Silvery flower (diploied) 219.892
CNS0095600Silvery flower (diploied) 320.365
CNS0095601Golden flower (diploid) 118.610
CNS0095602Golden flower (diploid) 222.501
CNS0095603Golden flower (diploid) 321.756
CNS0095604Slightly white alabastrum(tetraploid) 122.658
CNS0095605Slightly white alabastrum(tetraploid) 217.969
CNS0095606Slightly white alabastrum(tetraploid) 339.433
CNS0095607Whole white alabastrum(tetraploid) 113.900
CNS0095608Whole white alabastrum(tetraploid) 28.091
CNS0095609Whole white alabastrum(tetraploid) 321.724
CNS0095610Silvery flower (tetraploid) 118.536
CNS0095611Silvery flower (tetraploid) 228.420
CNS0095612Silvery flower (tetraploid) 318.504
CNS0095613Golden flower (tetraploid) 110.064
CNS0095614Golden flower (tetraploid) 217.364
CNS0095615Golden flower (tetraploid) 312.414
CRA001975CRR073297Stem 146.980
CRR073298Stem 243.327
CRR073299Stem 349.181
CRR073300Leaf 140.149
CRR073301Leaf 238.160
CRR073302Leaf 334.565
CRR073303Juvenile bud 133.175
CRR073304Juvenile bud 219.993
CRR073305Juvenile bud 343.820
CRR073306Third green 19.327
CRR073307Third green 28.814
CRR073308Third green 311.502
CRR073309Second white 113.004
CRR073310Second white 211.879
CRR073311Second white 311.421
CRR073312Silver flowering 111.130
CRR073313Silver flowering 213.888
CRR073314Silver flowering 312.718
CRR073315Gold flowering 145.608
CRR073316Gold flowering 274.066
CRR073317Gold flowering 359.885
CRR073318Tawny withering 147.904
CRR073319Tawny withering 238.384
CRR073320Tawny withering 344.269