Detail information of GWHGAAZE000564


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004139928.13.3474E-104PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Cucumis sativus]
Swissprottr|Q94F47|UBC28_ARATH2E-105Ubiquitin-conjugating enzyme E2 28
trEMBLtr|A0A0A0KEB9|A0A0A0KEB9_CUCSA1E-104Uncharacterized protein {ECO:0000313|EMBL:KGN46767.1}
TAIR10AT1G64230.21E-82ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1132975911332279+
GWHAAZE00000001mRNA1132975911332279+
GWHAAZE00000001exon1132975911329828+
GWHAAZE00000001exon1133078711330914+
GWHAAZE00000001exon1133145111331555+
GWHAAZE00000001exon1133213611332279+
GWHAAZE00000001CDS1132975911329828+
GWHAAZE00000001CDS1133078711330914+
GWHAAZE00000001CDS1133145111331555+
GWHAAZE00000001CDS1133213611332279+
Transcript Sequence

Network for GWHGAAZE000564

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51413.20E-53
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf338.206
SRR3591706second leaf200.357
SRR3591707mature leaf291.024
SRR3591708Shoot apex277.020
SRR3591709Stem583.165
SRR3591710White floral bud341.120
SRR3591711White flower573.709
SRR3591712Green floral bud349.249
SRR3591713Yellow flower911.436
SRP173429 SRR8316895Juvenile bud stage 244.358
SRR8316896Juvenile bud stage 407.824
SRR8316897Juvenile bud stage 190.197
SRR8316894Third green stage 140.016
SRR8316900Third green stage 527.354
SRR8316901Third green stage 547.002
SRR8316898Complete white stage 255.848
SRR8316899Complete white stage 703.383
SRR8316903Complete white stage 391.011
SRR8316902Silver flowering stage390.319
SRR8316904Silver flowering stage409.868
SRR8316905Silver flowering stage266.816
SRR8316906Gold flowering stage 985.176
SRR8316907Gold flowering stage 1009.455
SRR8316908Gold flowering stage 792.964
SRP132670SRR6706286Control800.787
SRR6706287Light intensity 50%697.193
SRR6706288Light intensity 20%695.182
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1334.425
CNS0095593Slightly white alabastrum(diploid) 2374.988
CNS0095594Slightly white alabastrum(diploid) 3336.691
CNS0095595Whole white alabastrum(diploid) 2313.682
CNS0095596Whole white alabastrum(diploid) 3285.216
CNS0095597Whole white alabastrum(diploid) 4309.025
CNS0095598Silvery flower (diploied) 1370.014
CNS0095599Silvery flower (diploied) 2416.631
CNS0095600Silvery flower (diploied) 3709.918
CNS0095601Golden flower (diploid) 1478.288
CNS0095602Golden flower (diploid) 2789.127
CNS0095603Golden flower (diploid) 3746.483
CNS0095604Slightly white alabastrum(tetraploid) 1333.439
CNS0095605Slightly white alabastrum(tetraploid) 2325.955
CNS0095606Slightly white alabastrum(tetraploid) 3483.471
CNS0095607Whole white alabastrum(tetraploid) 1321.185
CNS0095608Whole white alabastrum(tetraploid) 2334.459
CNS0095609Whole white alabastrum(tetraploid) 3368.948
CNS0095610Silvery flower (tetraploid) 1531.493
CNS0095611Silvery flower (tetraploid) 2642.083
CNS0095612Silvery flower (tetraploid) 3539.613
CNS0095613Golden flower (tetraploid) 1802.789
CNS0095614Golden flower (tetraploid) 2662.704
CNS0095615Golden flower (tetraploid) 3864.900
CRA001975CRR073297Stem 1194.852
CRR073298Stem 2212.124
CRR073299Stem 3221.865
CRR073300Leaf 1291.361
CRR073301Leaf 2309.592
CRR073302Leaf 3260.796
CRR073303Juvenile bud 1288.792
CRR073304Juvenile bud 2335.333
CRR073305Juvenile bud 3327.931
CRR073306Third green 1448.091
CRR073307Third green 2418.624
CRR073308Third green 3345.859
CRR073309Second white 1555.543
CRR073310Second white 2458.145
CRR073311Second white 3396.492
CRR073312Silver flowering 1398.476
CRR073313Silver flowering 2330.497
CRR073314Silver flowering 3266.712
CRR073315Gold flowering 1250.024
CRR073316Gold flowering 2241.019
CRR073317Gold flowering 3227.429
CRR073318Tawny withering 1300.647
CRR073319Tawny withering 2322.147
CRR073320Tawny withering 3256.672