Gene detail

Detail information of GWHGAAZE000563

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002325632.1	putative plant disease resistance family protein [Populus trichocarpa]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|B9INK3\|B9INK3_POPTR	Putative plant disease resistance family protein {ECO:0000313\|EMBL:EEF00014.1}
TAIR10	AT5G58300.2	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	11324901	11327443	+
GWHAAZE00000001	mRNA	11324901	11327443	+
GWHAAZE00000001	exon	11324901	11326188	+
GWHAAZE00000001	exon	11326812	11327443	+
GWHAAZE00000001	CDS	11324901	11326188	+
GWHAAZE00000001	CDS	11326812	11327443	+

Transcript Sequence
>GWHTAAZE000565 ATGAAAAACTGCTGTGCCTGCCAACTGCTTCTTTCCATCTTGGCCATACTTAGTCTTCTTTCTTTGGCTCTTGGTGATATGAGTTCAGATAAACAAGCTCTTCTTGCATTTTCAGCAGCAGTTCCCCATGCTAGGAAGCTCAACTGGAATCCAGCTACCTCCATCTGCACATCTTGGGTCGGCATCACTTGCACTCAGAATCTCACTGGTGTGCTTACTCTTCGACTTCCTGGTGTTGGACTTGCAGGCCCGGTCCCACCCAACACTCTTGGAAACTTAAGTCACTTAAGGGTTCTCAGCCTTCGGTCAAATCTCCTTAGTGGAAATTTTCCTAATGATATTGCTTCCCTTCCTTCTCTTCAGTACCTCTTTCTTCAACACAATAATTTCTCCGGTAATCTACCGGCTTCCTTTCCCTCCAAACTCAATGCATTGGATCTTTCATTTAATTCCTTCACTGGGAAAATTCCACTAACAATTCAGAATTTAACTCAACTCACTACATTGAGTCTACAGAATAATTCCCTTTCCGGGTCAATTCCGAATCTCTCCCTCCAAAGGCTGATACAGTTGAACCTAAGTTACAATCATCTTAATGGCTCTATTCCAAGTTCCCTACGAGCATTCCCCAATTCTTCTTTTGTAGGCAATTCGCACTTGTGTGGACTACCTTTAAGTCCTTGTTCCGCAATACTCCCTTCACCTTCTCCATCCCCTACTTATTTTGCACCCCCACCAAAAGGTCCTAAACATCAAAGCTCGAAAAAGAAACTCACTTTAGGGGCTATTATTGCCATTGCAGTTGGAGGGGCCGTGCTGCTAATTCTTGTGGCTCTAATCATTTTCTTGTGCTGCTTTAAGAAAAAGGAGAGTGATAGCAGTGGTGTTGTTGAAGTAAAATCTTCTAGCGGTCAAAGGAGTGAGAAACCAAGGGAGGAGTTTGGTAGTGGGGTGCAAGAGCCTGCAAAAAACAAGCTGGTTTTCTTCGAAGGTTGTTCGTATAATTTTGACCTTGACGATTTATTGAGGGCTTCAGCTGAAGTGCTTGGAAAGGGGAGTTACGGAACTGCATACAAGGCTGTTTTGGAGGAGTCAACGACTGTGGTGGTAAAAAGGTTGAAAGAAGTAGTGGTAGGGAAAAAGGAATTCGAACAGCAAATGGAGACCGTAGGGAGAGTTGGTCAGCACGCAAATATTGTGCCTCTACGTGCTTATTACTACTCTAAAGATGAGAAGCTTCTCGTTTGCGATTACTTCCCTGGGGGTAGCTTGTCCACAATCTTGCATGGCAACCGCGGCCCAGAAAGAAGTCCACTAGACTGGGGGACCAGATTTAAGATCTCCCTTGGAGCTGCAAAAGGAATAGCTCATATCCACTCAGTGGGTGGTCCTAAGTTCACCCACGGCAACATCAAGTCCTCAAACATCCTCCTCAACCAAGACCTCGATGGCTATGTATCTGACTTAGCCCTAGCCCCCCTAATGAACTTTGCCCCAAATCCGTCTCGCCAGCTTGGTTACCGTGCTCCTGAGCTCATTGAAACCCGAAAACACACGCACAAATCAGATGTATACAGTTTTGGCATAGTCTTACTAGAAATGTTAACCGGGAAACAACCACTTCAGTCACCGAGCCGTGACGACATGGTCGATCTTCCTCGGTGGGTCCAGTCAGTTGTGAGGGAGGAGTGGACTGCCGAGGTTTTTGACATTGAGTTGCTGAGTATTCAAAACATTGAAGAGGAGATGGTTCAAATGCTGCAAATCGCTATGGCGTGTGTGAATAGGGTACCAGATATGCGGCCCCACATGGATGAAGTTGTTAAAATGATTGAAGAGGTACGGATATCTGAATCGGAGAACCGGCCATTGTCAGATGAGAATAAGTCAAAGGACTCAAATGTGCACACCCACTCTTAA

Network for GWHGAAZE000563

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	64	9.70E-08
PF13855.7	LRR_8	85	130	2.20E-08
PF00069.26	Pkinase	346	609	4.70E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.062
	SRR3591706	second leaf	17.247
	SRR3591707	mature leaf	1.541
	SRR3591708	Shoot apex	22.114
	SRR3591709	Stem	27.392
	SRR3591710	White floral bud	1.768
	SRR3591711	White flower	1.650
	SRR3591712	Green floral bud	7.803
	SRR3591713	Yellow flower	0.195
SRP173429	SRR8316895	Juvenile bud stage	5.495
	SRR8316896	Juvenile bud stage	5.894
	SRR8316897	Juvenile bud stage	2.059
	SRR8316894	Third green stage	3.151
	SRR8316900	Third green stage	6.540
	SRR8316901	Third green stage	6.747
	SRR8316898	Complete white stage	0.117
	SRR8316899	Complete white stage	4.938
	SRR8316903	Complete white stage	0.445
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.090
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.042
	SRR8316907	Gold flowering stage	0.210
	SRR8316908	Gold flowering stage	0.053
SRP132670	SRR6706286	Control	6.957
	SRR6706287	Light intensity 50%	7.471
	SRR6706288	Light intensity 20%	8.727
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.614
	CNS0095593	Slightly white alabastrum(diploid) 2	6.922
	CNS0095594	Slightly white alabastrum(diploid) 3	4.046
	CNS0095595	Whole white alabastrum(diploid) 2	3.617
	CNS0095596	Whole white alabastrum(diploid) 3	3.044
	CNS0095597	Whole white alabastrum(diploid) 4	3.394
	CNS0095598	Silvery flower (diploied) 1	2.945
	CNS0095599	Silvery flower (diploied) 2	3.216
	CNS0095600	Silvery flower (diploied) 3	1.071
	CNS0095601	Golden flower (diploid) 1	1.662
	CNS0095602	Golden flower (diploid) 2	1.319
	CNS0095603	Golden flower (diploid) 3	1.041
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.958
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.813
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.905
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.439
	CNS0095610	Silvery flower (tetraploid) 1	0.522
	CNS0095611	Silvery flower (tetraploid) 2	0.269
	CNS0095612	Silvery flower (tetraploid) 3	0.350
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.181
	CNS0095615	Golden flower (tetraploid) 3	0.087
CRA001975	CRR073297	Stem 1	12.429
	CRR073298	Stem 2	10.952
	CRR073299	Stem 3	11.075
	CRR073300	Leaf 1	11.940
	CRR073301	Leaf 2	12.566
	CRR073302	Leaf 3	8.953
	CRR073303	Juvenile bud 1	7.573
	CRR073304	Juvenile bud 2	6.403
	CRR073305	Juvenile bud 3	8.761
	CRR073306	Third green 1	0.025
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.428
	CRR073309	Second white 1	0.433
	CRR073310	Second white 2	0.025
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.111
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.607
	CRR073316	Gold flowering 2	3.484
	CRR073317	Gold flowering 3	4.188
	CRR073318	Tawny withering 1	19.087
	CRR073319	Tawny withering 2	9.097
	CRR073320	Tawny withering 3	28.645