Gene detail

Detail information of GWHGAAZE000562

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008456254.1	PREDICTED: 26S protease regulatory subunit 6B homolog [Cucumis melo]
Swissprot	tr\|Q9SEI4\|PRS6B_ARATH	26S protease regulatory subunit 6B homolog
trEMBL	tr\|A0A0A0KD39\|A0A0A0KD39_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN46764.1}
TAIR10	AT5G58290.1	regulatory particle triple-A ATPase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	11304869	11309894	+
GWHAAZE00000001	mRNA	11304869	11309894	+
GWHAAZE00000001	exon	11304869	11305360	+
GWHAAZE00000001	exon	11307965	11308195	+
GWHAAZE00000001	exon	11308776	11308934	+
GWHAAZE00000001	exon	11309059	11309211	+
GWHAAZE00000001	exon	11309321	11309404	+
GWHAAZE00000001	exon	11309760	11309894	+
GWHAAZE00000001	CDS	11304869	11305360	+
GWHAAZE00000001	CDS	11307965	11308195	+
GWHAAZE00000001	CDS	11308776	11308934	+
GWHAAZE00000001	CDS	11309059	11309211	+
GWHAAZE00000001	CDS	11309321	11309404	+
GWHAAZE00000001	CDS	11309760	11309894	+

Transcript Sequence
>GWHTAAZE000564 ATGGCAGCATCAGCAATGGTCCTAGACCCCAAACCCTCCTCTTCTCCACCCCCAACCCTAACCCTCCCAACCCCCCAGCCCACCCCCTCCCCACCCTCTCCCGACGACGACGACCTCTACACCCGCCTCAAATCCCTCCAGCGCCAACTCGAATTCATCGAGATCCAAGAAGAGTACGTAAAAGATGAACAGAAGAATCTCAAGCGCGAGCTCTTACGAGCTCAAGAAGAGGTGAAGAGAATCCAATCGGTTCCACTCGTTATCGGCCAGTTCATGGAGATGATCGACCAGAATAATGGGATTGTAGGGTCCACCACGGGGTCGAATTATTATGTAAGGATTTTGAGTACTATTAATAGGGAGCTTTTGAAGCCTTCGGCTTCGGTGGCGTTGCATCGCCACTCGAATGCGCTCGTTGACGTCTTGCCTCCTGAGGCGGATTCGAGTATTTCCCTACTTAGTCAGTCAGAGAAGCCGGATATTTCTTATAATGATATTGGAGGTTGTGATATCCAAAAGCAGGAAATACGTGAAGCAGTGGAGTTACCTTTGACTCATCATGAATTGTACAAACAGATTGGTATAGATCCTCCTCGTGGTGTCTTGCTTTATGGTCCTCCTGGCACTGGTAAAACTATGCTTGCCAAAGCTGTTGCCAATCATACAACTGCTGCCTTCATTAGAGTTGTTGGATCTGAATTTGTTCAGAAGTATTTGGGTGAGGGTCCACGAATGGTCCGTGATGTTTTCCGCCTTGCCAAAGAAAATGCTCCTGCAATTATCTTTATCGATGAGGTAGATGCAATTGCTACTGCTAGGTTTGATGCACAAACTGGAGCTGATAGAGAAGTTCAGCGTATCCTTATGGAACTCTTAAATCAGATGGATGGGTTTGATCAGACAGTGAATGTAAAGGTTATAATGGCAACCAATCGAGCTGACACTTTGGACCCTGCGCTTCTGCGTCCTGGAAGGCTTGATCGAAAGATCGAGTTTCCTTTACCTGATAGGCGACAAAAGAGGCTTGTTTTCCAGGTTTGCACTGCTAAAATGAATTTAGGCGACGAAGTTGATTTGGAGGACTACGTTTCTCGCCCAGATAAAATTAGTGCTGCCGAGATTGCGGCTATATGCCAAGAAGCAGGGATGCATGCAGTGCGCAAGAACCGCTATGTCATTCTCCCAAAGGACTTTGAGAAGGGTTACAGAACAAACGTGAAAAAGCCTGACACTGACTTCGATTTCTACAAATGA

Network for GWHGAAZE000562

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16450.6	Prot_ATP_ID_OB	88	143	3.70E-10
PF00004.30	AAA	201	334	3.10E-44
PF17862.2	AAA_lid_3	357	399	1.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03063	PSMC4, RPT3	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.678
	SRR3591706	second leaf	23.074
	SRR3591707	mature leaf	19.207
	SRR3591708	Shoot apex	55.067
	SRR3591709	Stem	36.463
	SRR3591710	White floral bud	39.447
	SRR3591711	White flower	50.443
	SRR3591712	Green floral bud	47.988
	SRR3591713	Yellow flower	36.937
SRP173429	SRR8316895	Juvenile bud stage	46.003
	SRR8316896	Juvenile bud stage	63.101
	SRR8316897	Juvenile bud stage	30.319
	SRR8316894	Third green stage	23.351
	SRR8316900	Third green stage	65.624
	SRR8316901	Third green stage	60.072
	SRR8316898	Complete white stage	19.186
	SRR8316899	Complete white stage	64.948
	SRR8316903	Complete white stage	38.297
	SRR8316902	Silver flowering stage	24.381
	SRR8316904	Silver flowering stage	28.921
	SRR8316905	Silver flowering stage	15.312
	SRR8316906	Gold flowering stage	38.782
	SRR8316907	Gold flowering stage	39.320
	SRR8316908	Gold flowering stage	44.355
SRP132670	SRR6706286	Control	46.387
	SRR6706287	Light intensity 50%	50.864
	SRR6706288	Light intensity 20%	55.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.597
	CNS0095593	Slightly white alabastrum(diploid) 2	60.239
	CNS0095594	Slightly white alabastrum(diploid) 3	55.290
	CNS0095595	Whole white alabastrum(diploid) 2	44.580
	CNS0095596	Whole white alabastrum(diploid) 3	46.737
	CNS0095597	Whole white alabastrum(diploid) 4	39.887
	CNS0095598	Silvery flower (diploied) 1	42.607
	CNS0095599	Silvery flower (diploied) 2	42.019
	CNS0095600	Silvery flower (diploied) 3	58.490
	CNS0095601	Golden flower (diploid) 1	39.992
	CNS0095602	Golden flower (diploid) 2	48.190
	CNS0095603	Golden flower (diploid) 3	48.542
	CNS0095604	Slightly white alabastrum(tetraploid) 1	66.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.677
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.709
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.503
	CNS0095610	Silvery flower (tetraploid) 1	63.252
	CNS0095611	Silvery flower (tetraploid) 2	62.046
	CNS0095612	Silvery flower (tetraploid) 3	55.388
	CNS0095613	Golden flower (tetraploid) 1	28.236
	CNS0095614	Golden flower (tetraploid) 2	41.564
	CNS0095615	Golden flower (tetraploid) 3	34.631
CRA001975	CRR073297	Stem 1	98.043
	CRR073298	Stem 2	86.408
	CRR073299	Stem 3	113.115
	CRR073300	Leaf 1	83.239
	CRR073301	Leaf 2	92.053
	CRR073302	Leaf 3	107.717
	CRR073303	Juvenile bud 1	117.843
	CRR073304	Juvenile bud 2	90.958
	CRR073305	Juvenile bud 3	125.227
	CRR073306	Third green 1	55.166
	CRR073307	Third green 2	50.730
	CRR073308	Third green 3	55.151
	CRR073309	Second white 1	70.690
	CRR073310	Second white 2	48.034
	CRR073311	Second white 3	37.655
	CRR073312	Silver flowering 1	44.706
	CRR073313	Silver flowering 2	40.682
	CRR073314	Silver flowering 3	30.781
	CRR073315	Gold flowering 1	42.095
	CRR073316	Gold flowering 2	42.663
	CRR073317	Gold flowering 3	44.075
	CRR073318	Tawny withering 1	83.523
	CRR073319	Tawny withering 2	69.546
	CRR073320	Tawny withering 3	93.529