Detail information of GWHGAAZE000546


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011080608.10PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Sesamum indicum]
Swissprottr|Q9FT70|RQL4B_ARATH1E-83ATP-dependent DNA helicase Q-like 4B
trEMBLtr|M5W6N4|M5W6N4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ09379.1}
TAIR10AT1G60930.17E-79RECQ helicase L4B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene1090809710915725-
GWHAAZE00000001mRNA1090809710915725-
GWHAAZE00000001exon1091569710915725-
GWHAAZE00000001exon1091547210915547-
GWHAAZE00000001exon1091525210915394-
GWHAAZE00000001exon1091484410914930-
GWHAAZE00000001exon1091438010914463-
GWHAAZE00000001exon1091375310913960-
GWHAAZE00000001exon1091305910913144-
GWHAAZE00000001exon1091271510912946-
GWHAAZE00000001exon1091241910912542-
GWHAAZE00000001exon1091220710912343-
GWHAAZE00000001exon1091113910911247-
GWHAAZE00000001exon1091097510911017-
GWHAAZE00000001exon1091063310910801-
GWHAAZE00000001exon1091024610910316-
GWHAAZE00000001exon1091005210910145-
GWHAAZE00000001exon1090966810909889-
GWHAAZE00000001exon1090924710909456-
GWHAAZE00000001exon1090879010909107-
GWHAAZE00000001exon1090809710908281-
GWHAAZE00000001CDS1091569710915725-
GWHAAZE00000001CDS1091547210915547-
GWHAAZE00000001CDS1091525210915394-
GWHAAZE00000001CDS1091484410914930-
GWHAAZE00000001CDS1091438010914463-
GWHAAZE00000001CDS1091375310913960-
GWHAAZE00000001CDS1091305910913144-
GWHAAZE00000001CDS1091271510912946-
GWHAAZE00000001CDS1091241910912542-
GWHAAZE00000001CDS1091220710912343-
GWHAAZE00000001CDS1091113910911247-
GWHAAZE00000001CDS1091097510911017-
GWHAAZE00000001CDS1091063310910801-
GWHAAZE00000001CDS1091024610910316-
GWHAAZE00000001CDS1091005210910145-
GWHAAZE00000001CDS1090966810909889-
GWHAAZE00000001CDS1090924710909456-
GWHAAZE00000001CDS1090879010909107-
GWHAAZE00000001CDS1090815610908281-
GWHAAZE00000001three_prime_UTR1090809710908155-
Transcript Sequence

Network for GWHGAAZE000546

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD11415.00E-15
PF00271.32Helicase_C1832885.10E-20
PF16124.6RecQ_Zn_bind3023633.30E-11
PF09382.11RQC3664633.80E-24
PF00570.24HRDC5125782.60E-13
PF14493.7HTH_406227186.00E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03654recQ RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0044237biological_processcellular metabolic process
GO:0006310biological_processDNA recombination
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0000166molecular_functionnucleotide binding
GO:0003824molecular_functioncatalytic activity
GO:0003676molecular_functionnucleic acid binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0043138molecular_function3'-5' DNA helicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.185
SRR3591706second leaf4.079
SRR3591707mature leaf2.080
SRR3591708Shoot apex12.042
SRR3591709Stem2.511
SRR3591710White floral bud2.502
SRR3591711White flower2.703
SRR3591712Green floral bud2.718
SRR3591713Yellow flower1.359
SRP173429 SRR8316895Juvenile bud stage 4.042
SRR8316896Juvenile bud stage 5.087
SRR8316897Juvenile bud stage 3.187
SRR8316894Third green stage 1.498
SRR8316900Third green stage 3.342
SRR8316901Third green stage 2.936
SRR8316898Complete white stage 1.114
SRR8316899Complete white stage 3.208
SRR8316903Complete white stage 1.096
SRR8316902Silver flowering stage0.557
SRR8316904Silver flowering stage1.236
SRR8316905Silver flowering stage0.494
SRR8316906Gold flowering stage 0.940
SRR8316907Gold flowering stage 0.726
SRR8316908Gold flowering stage 0.844
SRP132670SRR6706286Control1.792
SRR6706287Light intensity 50%2.629
SRR6706288Light intensity 20%3.205
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.885
CNS0095593Slightly white alabastrum(diploid) 23.950
CNS0095594Slightly white alabastrum(diploid) 32.508
CNS0095595Whole white alabastrum(diploid) 22.157
CNS0095596Whole white alabastrum(diploid) 31.894
CNS0095597Whole white alabastrum(diploid) 41.685
CNS0095598Silvery flower (diploied) 13.429
CNS0095599Silvery flower (diploied) 22.775
CNS0095600Silvery flower (diploied) 31.345
CNS0095601Golden flower (diploid) 12.728
CNS0095602Golden flower (diploid) 21.352
CNS0095603Golden flower (diploid) 31.545
CNS0095604Slightly white alabastrum(tetraploid) 13.823
CNS0095605Slightly white alabastrum(tetraploid) 22.865
CNS0095606Slightly white alabastrum(tetraploid) 35.322
CNS0095607Whole white alabastrum(tetraploid) 11.885
CNS0095608Whole white alabastrum(tetraploid) 21.550
CNS0095609Whole white alabastrum(tetraploid) 32.784
CNS0095610Silvery flower (tetraploid) 11.766
CNS0095611Silvery flower (tetraploid) 21.721
CNS0095612Silvery flower (tetraploid) 30.980
CNS0095613Golden flower (tetraploid) 10.635
CNS0095614Golden flower (tetraploid) 21.019
CNS0095615Golden flower (tetraploid) 30.503
CRA001975CRR073297Stem 17.504
CRR073298Stem 24.958
CRR073299Stem 34.639
CRR073300Leaf 12.839
CRR073301Leaf 22.573
CRR073302Leaf 31.606
CRR073303Juvenile bud 10.847
CRR073304Juvenile bud 20.637
CRR073305Juvenile bud 31.591
CRR073306Third green 10.146
CRR073307Third green 20.088
CRR073308Third green 30.314
CRR073309Second white 10.154
CRR073310Second white 20.251
CRR073311Second white 30.193
CRR073312Silver flowering 10.072
CRR073313Silver flowering 20.383
CRR073314Silver flowering 30.293
CRR073315Gold flowering 11.547
CRR073316Gold flowering 22.204
CRR073317Gold flowering 31.323
CRR073318Tawny withering 13.684
CRR073319Tawny withering 23.023
CRR073320Tawny withering 34.388