Gene detail

Detail information of GWHGAAZE000533

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009358396.1	0	PREDICTED: 60S ribosomal protein L5-1-like [Pyrus x bretschneideri]
Swissprot	tr\|Q8LBI1\|RL51_ARATH	1E-179	60S ribosomal protein L5-1
trEMBL	tr\|I3NMI8\|I3NMI8_HEVBR	0	60S ribosomal protein L5A {ECO:0000313\|EMBL:ADR71225.1}
TAIR10	AT3G25520.1	8E-127	ribosomal protein L5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	10627883	10631490	-
GWHAAZE00000001	mRNA	10627883	10631490	-
GWHAAZE00000001	exon	10631488	10631490	-
GWHAAZE00000001	exon	10630270	10630339	-
GWHAAZE00000001	exon	10630089	10630180	-
GWHAAZE00000001	exon	10629552	10629678	-
GWHAAZE00000001	exon	10629386	10629465	-
GWHAAZE00000001	exon	10629180	10629296	-
GWHAAZE00000001	exon	10628715	10628849	-
GWHAAZE00000001	exon	10628408	10628577	-
GWHAAZE00000001	exon	10627883	10627934	-
GWHAAZE00000001	CDS	10631488	10631490	-
GWHAAZE00000001	CDS	10630270	10630339	-
GWHAAZE00000001	CDS	10630089	10630180	-
GWHAAZE00000001	CDS	10629552	10629678	-
GWHAAZE00000001	CDS	10629386	10629465	-
GWHAAZE00000001	CDS	10629180	10629296	-
GWHAAZE00000001	CDS	10628715	10628849	-
GWHAAZE00000001	CDS	10628408	10628577	-
GWHAAZE00000001	CDS	10627883	10627934	-

Transcript Sequence
>GWHTAAZE000535 ATGCCGTTCGTCAAGTCTCAGAAGTCAAGAGCTTACTTTAAGCGCTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGCAAGACAGACTATCGTGCCAGGATTCGCCTGATTAACCAGGACAAAAACAAATACAACACTCCAAAATATCGTTTTGTTGTGCGATTCACCAACAAGGATATAATTGCACAAATAATATCTGCTTCCATTGCTGGTGACATGGTTATGGCTGCTGCGTATGCCCATGAATTGCCTCATTATGGGCTGGAAGTGGGTCTTACAAATTACGCTGCTGCTTACTGCACGGGACTTCTTTTGGCTCGCCGTGTGCTGAAAAAGCTAGAGATGGACGAGGAGTACGAGGGAAATGTTGAGGCAACTGGGGAAGATTACTCTGTTGAACCATCGGAAAGCAGGAGGCCTTTCCGTGCTCTCCTGGACGTTGGCCTGCTTAGAACAACCACTGGAAATCGTGTCTTCGGTGCCCTCAAGGGAGCATTGGATGGAGGACTTGACATTCCCCACAGCGAGAAGAGGTTTGCTGGATTTGACAAAGAGAGCAAGCAACTTGATGCTGAAGTTCATCGCAAGTATGTCTATGGAGGCCATGTTGCTGCATACATGAGGACTTTAATGGAGGACGAGCCAGAGAGATACCAGACTCACTTTTCTGAGTACATAAAGAGGGAGATTGAGCCAGATAGCATTGAGGAGATGTACAAGAAGGTCCATGCTGCCATACGTGCTGACCCTACACCAAAGAAAATTGTGAAGGAACCTCCAAAAGAACACAAGAGGTATAACCTTAAGAAGCTGACTTATGAGGAAAGAAAGGCTAAGTTGATAGAG

Network for GWHGAAZE000533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17144.5	Ribosomal_L5e	14	175	8.80E-84
PF14204.7	Ribosomal_L18_c	191	280	4.60E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	825.295
	SRR3591706	second leaf	344.122
	SRR3591707	mature leaf	169.640
	SRR3591708	Shoot apex	864.455
	SRR3591709	Stem	393.098
	SRR3591710	White floral bud	492.247
	SRR3591711	White flower	573.243
	SRR3591712	Green floral bud	774.889
	SRR3591713	Yellow flower	404.131
SRP173429	SRR8316895	Juvenile bud stage	403.197
	SRR8316896	Juvenile bud stage	550.561
	SRR8316897	Juvenile bud stage	303.547
	SRR8316894	Third green stage	254.753
	SRR8316900	Third green stage	839.886
	SRR8316901	Third green stage	700.616
	SRR8316898	Complete white stage	165.722
	SRR8316899	Complete white stage	762.571
	SRR8316903	Complete white stage	257.852
	SRR8316902	Silver flowering stage	127.163
	SRR8316904	Silver flowering stage	147.509
	SRR8316905	Silver flowering stage	62.098
	SRR8316906	Gold flowering stage	218.420
	SRR8316907	Gold flowering stage	211.604
	SRR8316908	Gold flowering stage	300.217
SRP132670	SRR6706286	Control	1037.232
	SRR6706287	Light intensity 50%	1080.286
	SRR6706288	Light intensity 20%	1183.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	569.577
	CNS0095593	Slightly white alabastrum(diploid) 2	650.181
	CNS0095594	Slightly white alabastrum(diploid) 3	510.050
	CNS0095595	Whole white alabastrum(diploid) 2	524.816
	CNS0095596	Whole white alabastrum(diploid) 3	573.742
	CNS0095597	Whole white alabastrum(diploid) 4	427.694
	CNS0095598	Silvery flower (diploied) 1	410.575
	CNS0095599	Silvery flower (diploied) 2	361.652
	CNS0095600	Silvery flower (diploied) 3	333.907
	CNS0095601	Golden flower (diploid) 1	316.721
	CNS0095602	Golden flower (diploid) 2	284.422
	CNS0095603	Golden flower (diploid) 3	289.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	595.929
	CNS0095605	Slightly white alabastrum(tetraploid) 2	542.166
	CNS0095606	Slightly white alabastrum(tetraploid) 3	869.276
	CNS0095607	Whole white alabastrum(tetraploid) 1	303.489
	CNS0095608	Whole white alabastrum(tetraploid) 2	280.332
	CNS0095609	Whole white alabastrum(tetraploid) 3	681.639
	CNS0095610	Silvery flower (tetraploid) 1	346.288
	CNS0095611	Silvery flower (tetraploid) 2	291.824
	CNS0095612	Silvery flower (tetraploid) 3	219.912
	CNS0095613	Golden flower (tetraploid) 1	170.264
	CNS0095614	Golden flower (tetraploid) 2	262.112
	CNS0095615	Golden flower (tetraploid) 3	100.715
CRA001975	CRR073297	Stem 1	963.942
	CRR073298	Stem 2	986.672
	CRR073299	Stem 3	1044.190
	CRR073300	Leaf 1	1098.239
	CRR073301	Leaf 2	1116.699
	CRR073302	Leaf 3	1268.514
	CRR073303	Juvenile bud 1	1188.982
	CRR073304	Juvenile bud 2	940.833
	CRR073305	Juvenile bud 3	966.554
	CRR073306	Third green 1	149.606
	CRR073307	Third green 2	152.704
	CRR073308	Third green 3	199.817
	CRR073309	Second white 1	126.079
	CRR073310	Second white 2	131.871
	CRR073311	Second white 3	78.203
	CRR073312	Silver flowering 1	97.883
	CRR073313	Silver flowering 2	136.380
	CRR073314	Silver flowering 3	128.856
	CRR073315	Gold flowering 1	329.678
	CRR073316	Gold flowering 2	400.279
	CRR073317	Gold flowering 3	300.353
	CRR073318	Tawny withering 1	847.917
	CRR073319	Tawny withering 2	665.552
	CRR073320	Tawny withering 3	881.656