Gene detail

Detail information of GWHGAAZE000528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089586.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Sesamum indicum]
Swissprot	tr\|Q9ASS4\|Y5838_ARATH	2E-172	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (Precursor)
trEMBL	tr\|B9SMS2\|B9SMS2_RICCO	0	ATP binding protein, putative {ECO:0000313\|EMBL:EEF35135.1}
TAIR10	AT5G48380.1	5E-141	BAK1-interacting receptor-like kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	10480327	10481313	+
GWHAAZE00000001	mRNA	10480327	10481313	+
GWHAAZE00000001	exon	10480327	10481313	+
GWHAAZE00000001	CDS	10480327	10481313	+

Transcript Sequence
>GWHTAAZE000530 ATGAGACTGAGTGATCTGATGAAGGCTACCGACAGCTTTAACAAAGAAAACATCATTGGAAAAGGAAGTACAGGAACCATGTACAAGGCAGTACTCGAAGACGGCACTTCTCTAATGGTGAAGAGGTTGCAGGATACTCAACACCCAGAGAAAGAATTTGCGGCCGAGATGGCAACCTTGGGAAAGGTGAAACACCGTAACTTGGTCCCACTTCTAGGGTTTTGTGTGGCTAAGAAGGAGAGGCTTTTGGTTTATAAGTACATGTCCAATGGTACCCTCTATGATAAATTACACCTCTTGGGTGAGGGTGTCAAACCTATGGATTGGCCTCTTAGGCTCAAAATTGGGATCGGGGCGGCCAAAGGATTTGCATGGCTTCATCACACTTGCAATCCCCGGATTATCCACCGGAACATAAGTTCAAAATGCATCTTATTGGACAGTGATTTCGAGCCCAAAATATCCGACTTTGGCCTCGCTAGGCTTATGAATCCTGTTGACACGCACTTGAGTACTTTTGTCAATGGGGAGTTTGGGGATCTGGGTTATGTTGCCCCTGAGTACGCGCGTACTCTAGTGGCGACCCCAAAGGGCGATGTCTACAGCTTTGGCGTAGTAATTCTTGAACTGGTAACTGGTGAGAGACCTACCCATGTGGCTAAAGCCCCCGAAACCTTTAAGGGTAATCTAGTTGAATGGATTACGCAACTTTCTAAAGAGTCAAAGCTTCAAGAAGCCATTGACCAATCTTTGACCAGGCAAGGTTATGATAGTGAGCTTTTCCAGTTTCTTAAAGTTGCGTGTAGTTGTGTACTACCGACCCACAAGGAGAGGCCGACTATGTTTGAAGTGTACCAGCTTTTGAGAGCTATTGGGGAGCGGTACCATTTCACAATGGATGATGATATTATGATGCTATCAGAGACTAGTAACGCTGATCACTTGGTGGAACTTATTGTTGCTCGGGATCAAAAGGGTATGAGTTAG

Network for GWHGAAZE000528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	16	285	8.90E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.078
	SRR3591706	second leaf	27.674
	SRR3591707	mature leaf	47.945
	SRR3591708	Shoot apex	25.389
	SRR3591709	Stem	68.402
	SRR3591710	White floral bud	41.188
	SRR3591711	White flower	62.166
	SRR3591712	Green floral bud	39.946
	SRR3591713	Yellow flower	45.673
SRP173429	SRR8316895	Juvenile bud stage	25.852
	SRR8316896	Juvenile bud stage	29.726
	SRR8316897	Juvenile bud stage	11.914
	SRR8316894	Third green stage	11.298
	SRR8316900	Third green stage	27.307
	SRR8316901	Third green stage	32.139
	SRR8316898	Complete white stage	20.483
	SRR8316899	Complete white stage	82.241
	SRR8316903	Complete white stage	30.394
	SRR8316902	Silver flowering stage	24.034
	SRR8316904	Silver flowering stage	30.639
	SRR8316905	Silver flowering stage	14.586
	SRR8316906	Gold flowering stage	67.386
	SRR8316907	Gold flowering stage	50.820
	SRR8316908	Gold flowering stage	73.727
SRP132670	SRR6706286	Control	43.769
	SRR6706287	Light intensity 50%	38.378
	SRR6706288	Light intensity 20%	38.943
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.751
	CNS0095593	Slightly white alabastrum(diploid) 2	31.458
	CNS0095594	Slightly white alabastrum(diploid) 3	24.918
	CNS0095595	Whole white alabastrum(diploid) 2	22.838
	CNS0095596	Whole white alabastrum(diploid) 3	16.721
	CNS0095597	Whole white alabastrum(diploid) 4	24.131
	CNS0095598	Silvery flower (diploied) 1	42.810
	CNS0095599	Silvery flower (diploied) 2	39.757
	CNS0095600	Silvery flower (diploied) 3	56.726
	CNS0095601	Golden flower (diploid) 1	42.151
	CNS0095602	Golden flower (diploid) 2	74.114
	CNS0095603	Golden flower (diploid) 3	71.512
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.651
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.213
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.798
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.413
	CNS0095610	Silvery flower (tetraploid) 1	48.125
	CNS0095611	Silvery flower (tetraploid) 2	56.102
	CNS0095612	Silvery flower (tetraploid) 3	46.268
	CNS0095613	Golden flower (tetraploid) 1	29.062
	CNS0095614	Golden flower (tetraploid) 2	48.414
	CNS0095615	Golden flower (tetraploid) 3	46.265
CRA001975	CRR073297	Stem 1	61.706
	CRR073298	Stem 2	62.736
	CRR073299	Stem 3	62.887
	CRR073300	Leaf 1	61.377
	CRR073301	Leaf 2	62.952
	CRR073302	Leaf 3	66.232
	CRR073303	Juvenile bud 1	68.418
	CRR073304	Juvenile bud 2	49.602
	CRR073305	Juvenile bud 3	100.325
	CRR073306	Third green 1	33.281
	CRR073307	Third green 2	34.689
	CRR073308	Third green 3	43.456
	CRR073309	Second white 1	66.414
	CRR073310	Second white 2	48.879
	CRR073311	Second white 3	48.288
	CRR073312	Silver flowering 1	55.072
	CRR073313	Silver flowering 2	61.005
	CRR073314	Silver flowering 3	36.090
	CRR073315	Gold flowering 1	93.443
	CRR073316	Gold flowering 2	112.410
	CRR073317	Gold flowering 3	140.446
	CRR073318	Tawny withering 1	112.412
	CRR073319	Tawny withering 2	109.348
	CRR073320	Tawny withering 3	88.817