Gene detail

Detail information of GWHGAAZE000518

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008235934.1	0	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Prunus mume]
Swissprot	tr\|Q67XL4\|Y3544_ARATH	5E-153	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBL	tr\|A0A061DNU9\|A0A061DNU9_THECC	0	RNA-binding CRS1 / YhbY domain protein {ECO:0000313\|EMBL:EOX93731.1}
TAIR10	AT3G25440.1	6E-110	RNA-binding CRS1 / YhbY (CRM) domain protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	10315523	10319389	+
GWHAAZE00000001	mRNA	10315523	10319389	+
GWHAAZE00000001	exon	10315523	10315743	+
GWHAAZE00000001	exon	10316870	10317179	+
GWHAAZE00000001	exon	10317731	10318138	+
GWHAAZE00000001	exon	10318871	10319389	+
GWHAAZE00000001	CDS	10315523	10315743	+
GWHAAZE00000001	CDS	10316870	10317179	+
GWHAAZE00000001	CDS	10317731	10318138	+
GWHAAZE00000001	CDS	10318871	10319389	+

Transcript Sequence
>GWHTAAZE000520 ATGATGGCGAGGGGTTTTTGTTCGATAACTATCTGCAGATCAACAATACATCTCAAGCATCTCTTCTATAATCCCCTCTACTTCTTCTTTCCGATCTTACCTCCTTCCATTCTTCCCAAACCCAGGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTATATATATATATATATATATGCATTTATGTTATTATCCTGAGCATATCTTCTGTGATGCCATATGCAAGGTTGTCGGGCCAAGTGCTACTACTGGTCCATTTTACGAGATACAAAGATTTCCCCTTGGAGGCTTTTCATGGATTCATTCTGCTCCTGTTCTAAACACAATTGACAAAGATGTGGAGCACACAGAAGACAATGCAGTCACTGAAGGTTCTGGCGATGCTATAGTGAAGAGGAAAAAACTGAAGGGAAAAAGAGCAGTTGTTAGGTGGTTAAAGTTCTTCAGGTGGAAGAAGAAGAAAGATTATGAACGAATGACAGCAGAAGAAAAAATCCTTTACAAACTAAGGAAGGCTCGGAAAAAGGAGGAAAGGATGATTGAAGCTCTCAAGAAGATCGAACCTAAAGAATCATCAGAAACGAAACATGACCCAGAAATTTTGACTCCGGAAGAGCACTTTTTCTTTTTAAAGATGGGCCAAAAGTCAAAGAACTATGTGCCGGTTGGAAGAAGGGGAATATACCAAGGTGTAATCCTTAACATGCACTTGCATTGGAAAAAGCATCAAACTCTGAAAGTGATAGTGAAGACATTTTCCCCTGAGGAGGTGAAGGAGATTGCGGTAGAGTTGGCAAGATTAAGTGGAGGAATTGTGCTCGACATTCAAGAAGACAACACAATTATTATGTATAGAGGAAAGAATTACTCGCAACCTCCAACAGAGATTATGTCACCTAGGACCACTCTCCCTAGAAAGAAGGCTTTAGATAAATCCAAATATAGAGATGGCCTCAGAGCCGTTAGGAAATACATTCCGAGACTCGAGCAGGACCTCGAGCTGCTTCGAGCAACAGCCGAAAACCAACCTGAAACAGGGCCACCCCTTAACAATGAATCCCAAATGACCAGTTCTGATATGCAAACGGACGCTTCTGATAAACTCAGGCAAATTATGGCCGGAAAAGTTGAACAACATGATGATAATGAAGATGAACTTATGACGGGTTCGGATTCTGAGGCATTGTCGGATATATTTGAGTCAGATTCAGATTCAGAGATCGAGGAGAAGGATGAACGGCCTCTTTACTTGAACGAGTTTGAAAAGTTTCCTGTACAAAATGTTGGAGAAGGTGAAGATTTTGAGGAGCACTTACGTAAAATATCGGCCGACTCGAAAAACTGTAAGTTATCGGGGAAAGATGATGAGTTGCCAGACCTTGATGAGGTTGATCGGATGGTTCTGCGAGCTGCTTCTCTGTTGAAAAAGAAGAGGAGATGA

Network for GWHGAAZE000518

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01985.22	CRS1_YhbY	207	291	1.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01148	PARN, PNLDC1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.531
	SRR3591706	second leaf	3.016
	SRR3591707	mature leaf	3.514
	SRR3591708	Shoot apex	6.368
	SRR3591709	Stem	5.048
	SRR3591710	White floral bud	6.012
	SRR3591711	White flower	9.845
	SRR3591712	Green floral bud	8.829
	SRR3591713	Yellow flower	8.987
SRP173429	SRR8316895	Juvenile bud stage	5.048
	SRR8316896	Juvenile bud stage	6.236
	SRR8316897	Juvenile bud stage	2.494
	SRR8316894	Third green stage	2.910
	SRR8316900	Third green stage	8.149
	SRR8316901	Third green stage	5.440
	SRR8316898	Complete white stage	1.402
	SRR8316899	Complete white stage	8.416
	SRR8316903	Complete white stage	2.100
	SRR8316902	Silver flowering stage	1.332
	SRR8316904	Silver flowering stage	2.300
	SRR8316905	Silver flowering stage	0.976
	SRR8316906	Gold flowering stage	2.619
	SRR8316907	Gold flowering stage	3.017
	SRR8316908	Gold flowering stage	1.920
SRP132670	SRR6706286	Control	4.794
	SRR6706287	Light intensity 50%	4.978
	SRR6706288	Light intensity 20%	5.130
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.129
	CNS0095593	Slightly white alabastrum(diploid) 2	4.782
	CNS0095594	Slightly white alabastrum(diploid) 3	4.292
	CNS0095595	Whole white alabastrum(diploid) 2	4.307
	CNS0095596	Whole white alabastrum(diploid) 3	4.724
	CNS0095597	Whole white alabastrum(diploid) 4	2.813
	CNS0095598	Silvery flower (diploied) 1	5.806
	CNS0095599	Silvery flower (diploied) 2	3.483
	CNS0095600	Silvery flower (diploied) 3	3.894
	CNS0095601	Golden flower (diploid) 1	3.398
	CNS0095602	Golden flower (diploid) 2	3.234
	CNS0095603	Golden flower (diploid) 3	3.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.423
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.486
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.315
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.341
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.024
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.304
	CNS0095610	Silvery flower (tetraploid) 1	5.507
	CNS0095611	Silvery flower (tetraploid) 2	5.844
	CNS0095612	Silvery flower (tetraploid) 3	3.495
	CNS0095613	Golden flower (tetraploid) 1	2.431
	CNS0095614	Golden flower (tetraploid) 2	5.013
	CNS0095615	Golden flower (tetraploid) 3	1.758
CRA001975	CRR073297	Stem 1	3.433
	CRR073298	Stem 2	4.147
	CRR073299	Stem 3	2.372
	CRR073300	Leaf 1	2.479
	CRR073301	Leaf 2	3.307
	CRR073302	Leaf 3	2.796
	CRR073303	Juvenile bud 1	1.820
	CRR073304	Juvenile bud 2	1.297
	CRR073305	Juvenile bud 3	1.389
	CRR073306	Third green 1	0.308
	CRR073307	Third green 2	0.027
	CRR073308	Third green 3	0.405
	CRR073309	Second white 1	0.218
	CRR073310	Second white 2	0.299
	CRR073311	Second white 3	0.205
	CRR073312	Silver flowering 1	0.334
	CRR073313	Silver flowering 2	0.231
	CRR073314	Silver flowering 3	0.139
	CRR073315	Gold flowering 1	1.091
	CRR073316	Gold flowering 2	3.145
	CRR073317	Gold flowering 3	0.519
	CRR073318	Tawny withering 1	3.077
	CRR073319	Tawny withering 2	3.144
	CRR073320	Tawny withering 3	3.042