Gene detail

Detail information of GWHGAAZE000496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008244684.1	2.9763E-127	PREDICTED: transcription factor bHLH62 [Prunus mume]
Swissprot	tr\|Q9SRT2\|BH062_ARATH	7E-85	Transcription factor bHLH62
trEMBL	tr\|M5VNC0\|M5VNC0_PRUPE	6E-127	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02381.1}
TAIR10	AT3G07340.1	1E-67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	9566990	9568627	-
GWHAAZE00000001	mRNA	9566990	9568627	-
GWHAAZE00000001	exon	9566990	9567091	-
GWHAAZE00000001	exon	9567185	9567253	-
GWHAAZE00000001	exon	9567340	9567405	-
GWHAAZE00000001	exon	9567508	9567711	-
GWHAAZE00000001	exon	9567938	9568627	-
GWHAAZE00000001	CDS	9567938	9568627	-
GWHAAZE00000001	CDS	9567508	9567711	-
GWHAAZE00000001	CDS	9567340	9567405	-
GWHAAZE00000001	CDS	9567185	9567253	-
GWHAAZE00000001	CDS	9566990	9567091	-

Transcript Sequence
>GWHTAAZE000498 ATGCCCACATGGCAGTCAAATGAACACTTGCAGCAGTACACCCACTTCGACTCCGCATTTAGCTCCATGGTCTCTTCGCCGGCGGCGCCTACCGGAGCTACCACCACAGACAGTTTTGCAATCCGGGAGCTCATCGGGAAACTGGGCACCATTTGTAATTCCGGCGAGATCTTGCCGGCGACTAACAATTCTTGCTATAGCACCCCGTTGAATTCTCCGCCGAAATCTCATGATTTACCCCGGAATTCAATTCCGTTGAATTTGAATCCGTCGTTGCCGGTGGTCACCGGCGATCCCGGGTTCGCCGAGCGGGCGGCCAAGTTTTCTTGCTTTGGTAGCCGGAGTTTTAATGGCCGGAGTAGCCAATTTGGGCTTAATAATACTAATAACGAATCGCAGTACAGATCTTCTTTACAGAGAGTTTCAAGTAATCCATCACTCAAATTAGCTGGATCTCCAATGGGAGTTCAAGAAAACAAGAGCCCTGCTCAAATGGAGATGAATTGTGCTAATGATGCGAAATTCAATAGATTACCGAGCTCTACTGCTAATTCCAATGACGATTCATCTGTTTCTGAGCAAAACCCAAGTGGGGAAAATGGATTCAAAAGTCAAAATGACATTAATTCAAGAAAGAGGAAACCAATTTCAAGAGGAAAGCGAAAAGAAGAGTCTCCAAATGCTACAAAAAAAGCTGAAGATGAGGATTTGAACTCAAAGAGATCAAAATTGACAGAAAGAAATGCAAAAGCTGAGGAAGAAACAAAAGCAGGAGCAAAAGAAGGTCAAAAACAAGAAAAAAACAGCCCAAAGCCACCAGAGCCACCGAAGGACTACATTCATGTAAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCTGAAAGAGTTAGACGAGAGAAGATTAGCGAACGAATGAAGCTCCTTCAAGATCTTGTTCCTGGTTGCAATAAGGTGACCGGAAAAGCACTAATGCTCGATGAAATTATAAACTATGTGCAGTCATTGCAATGCCAAGTTGAGTTCCTCTCTATGAAGCTAGCTTCAGTTAATCCAAGACTAGATATTAACATGGATAGTATCCTCTCAAAGGATGTAAGTTTAAAACAAAAATCTATGTATTAG

Network for GWHGAAZE000496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	292	339	2.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.900
	SRR3591706	second leaf	6.764
	SRR3591707	mature leaf	5.264
	SRR3591708	Shoot apex	6.848
	SRR3591709	Stem	19.287
	SRR3591710	White floral bud	5.833
	SRR3591711	White flower	5.582
	SRR3591712	Green floral bud	4.589
	SRR3591713	Yellow flower	23.856
SRP173429	SRR8316895	Juvenile bud stage	3.714
	SRR8316896	Juvenile bud stage	2.562
	SRR8316897	Juvenile bud stage	0.903
	SRR8316894	Third green stage	3.069
	SRR8316900	Third green stage	5.589
	SRR8316901	Third green stage	3.972
	SRR8316898	Complete white stage	1.207
	SRR8316899	Complete white stage	10.340
	SRR8316903	Complete white stage	3.170
	SRR8316902	Silver flowering stage	0.701
	SRR8316904	Silver flowering stage	1.367
	SRR8316905	Silver flowering stage	0.443
	SRR8316906	Gold flowering stage	3.177
	SRR8316907	Gold flowering stage	2.022
	SRR8316908	Gold flowering stage	2.725
SRP132670	SRR6706286	Control	5.032
	SRR6706287	Light intensity 50%	4.356
	SRR6706288	Light intensity 20%	4.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.204
	CNS0095593	Slightly white alabastrum(diploid) 2	1.093
	CNS0095594	Slightly white alabastrum(diploid) 3	2.512
	CNS0095595	Whole white alabastrum(diploid) 2	2.926
	CNS0095596	Whole white alabastrum(diploid) 3	1.443
	CNS0095597	Whole white alabastrum(diploid) 4	1.255
	CNS0095598	Silvery flower (diploied) 1	6.960
	CNS0095599	Silvery flower (diploied) 2	1.704
	CNS0095600	Silvery flower (diploied) 3	2.802
	CNS0095601	Golden flower (diploid) 1	4.734
	CNS0095602	Golden flower (diploid) 2	11.612
	CNS0095603	Golden flower (diploid) 3	9.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.486
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.621
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.123
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.288
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.108
	CNS0095610	Silvery flower (tetraploid) 1	2.590
	CNS0095611	Silvery flower (tetraploid) 2	3.559
	CNS0095612	Silvery flower (tetraploid) 3	13.031
	CNS0095613	Golden flower (tetraploid) 1	4.603
	CNS0095614	Golden flower (tetraploid) 2	3.175
	CNS0095615	Golden flower (tetraploid) 3	4.410
CRA001975	CRR073297	Stem 1	7.213
	CRR073298	Stem 2	6.757
	CRR073299	Stem 3	5.370
	CRR073300	Leaf 1	8.257
	CRR073301	Leaf 2	6.480
	CRR073302	Leaf 3	5.214
	CRR073303	Juvenile bud 1	6.560
	CRR073304	Juvenile bud 2	3.903
	CRR073305	Juvenile bud 3	9.309
	CRR073306	Third green 1	2.076
	CRR073307	Third green 2	3.091
	CRR073308	Third green 3	2.128
	CRR073309	Second white 1	0.723
	CRR073310	Second white 2	1.506
	CRR073311	Second white 3	3.583
	CRR073312	Silver flowering 1	5.768
	CRR073313	Silver flowering 2	4.564
	CRR073314	Silver flowering 3	7.878
	CRR073315	Gold flowering 1	6.197
	CRR073316	Gold flowering 2	11.366
	CRR073317	Gold flowering 3	7.012
	CRR073318	Tawny withering 1	30.406
	CRR073319	Tawny withering 2	24.715
	CRR073320	Tawny withering 3	33.917